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KC821622.1__AGO48802.1__Phi46-3_gp058__00058

Bact-Vir

KC821622.1__AGO48802.1__Phi46-3_gp058__00058

Identity

Accession:
KC821622 ↗
Kingdom:
phage

Quality

89.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-54
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.80 68.0 5.87e-01 94.4% 79.8%
4nhxA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.72 52.0 3.43e-01 77.8% 71.6%
2rb7A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.70 54.0 3.47e-01 83.3% 68.8%
3nybA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.68 51.0 4.10e-01 81.5% 98.2%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.68 45.0 3.14e-01 70.4% 21.6%
4xmqA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.67 56.0 4.31e-01 96.3% 99.2%
1y4oA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.67 50.0 4.18e-01 85.2% 56.7%
1j3wC00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.66 50.0 3.84e-01 85.2% 45.1%
4at7A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.66 55.0 4.05e-01 96.3% 68.4%
5zx8A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.63 43.0 3.03e-01 96.3% 21.0%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.63 55.0 4.31e-01 92.6% 65.7%
3l44A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.63 56.0 3.81e-01 98.1% 45.9%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 55.0 4.40e-01 98.1% 89.6%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 53.0 4.21e-01 94.4% 52.3%
4zm3B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.62 53.0 3.90e-01 94.4% 59.2%
3fc7A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 50.0 4.14e-01 90.7% 72.0%
4fh3A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.62 48.0 3.72e-01 87.0% 88.0%
3vp7A00 1.10.418.40 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Autophagy protein 6/Beclin 1 0.60 54.0 3.75e-01 98.1% 62.0%
1ujrA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.60 44.0 3.89e-01 81.5% 59.0%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.60 52.0 4.09e-01 96.3% 56.0%
3lovA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 42.0 3.04e-01 74.1% 32.9%
5x6vF00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 46.0 3.57e-01 85.2% 46.6%
2pb2B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 48.0 3.59e-01 92.6% 52.1%
7sz2A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.58 43.0 3.73e-01 83.3% 65.2%
3d89A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.58 42.0 3.19e-01 79.6% 94.1%
3d6wB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 36.0 3.26e-01 75.9% 48.6%
1ohvA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 48.0 3.33e-01 90.7% 43.4%
2wpvE00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 45.0 2.83e-01 85.2% 41.1%
2cjgA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 47.0 3.36e-01 90.7% 46.8%
6fucA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 41.0 3.54e-01 87.0% 48.8%
3fvcA01 2.30.30.1230 Mainly Beta › Roll › SH3 type barrels. › 0.56 41.0 3.65e-01 79.6% 77.5%
1cjcA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 35.0 2.25e-01 85.2% 14.1%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.56 43.0 3.42e-01 83.3% 50.0%
1o70A02 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.55 43.0 3.28e-01 94.4% 40.4%
7wffb01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 40.0 2.47e-01 77.8% 30.1%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.55 41.0 3.24e-01 83.3% 71.7%
1qo7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 45.0 2.77e-01 96.3% 35.3%
3oymA01 1.10.340.70 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.54 43.0 3.65e-01 90.7% 86.0%
3ip3A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 42.0 3.03e-01 96.3% 76.8%
2g3wA00 3.10.640.10 Alpha Beta › Roll › Restriction endonuclease-like alpha-beta roll fold › Restriction endonuclease-like alpha-beta roll domain 0.53 39.0 2.81e-01 83.3% 81.6%
6i8wB01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 46.0 2.90e-01 100.0% 68.4%
4q05A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 45.0 2.86e-01 100.0% 48.9%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.52 42.0 3.15e-01 88.9% 42.8%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 38.0 3.02e-01 83.3% 77.5%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 2.87e-01 81.5% 65.0%
2ot9A01 3.10.640.10 Alpha Beta › Roll › Restriction endonuclease-like alpha-beta roll fold › Restriction endonuclease-like alpha-beta roll domain 0.51 40.0 2.83e-01 87.0% 73.9%
3d1cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 44.0 2.92e-01 100.0% 73.3%
4trtA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 37.0 2.98e-01 81.5% 68.9%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 36.0 3.03e-01 81.5% 75.2%
4uoiC00 3.30.160.890 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C 0.50 36.0 3.71e-01 79.6% 86.3%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4992470 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.81 41.0 3.95e-01 74.1% 43.3%
5073548 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.77 63.0 5.14e-01 90.7% 56.0%
4927204 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.76 62.0 5.25e-01 90.7% 61.1%
3721249 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.73 51.0 5.16e-01 88.9% 74.5%
3700654 6110.1.1.1 alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 0.72 57.0 3.34e-01 100.0% 10.9%
4207880 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.71 41.0 3.37e-01 83.3% 30.0%
4928516 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 58.0 4.51e-01 96.3% 47.5%
4928701 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 56.0 4.53e-01 92.6% 54.3%
4991121 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 53.0 4.26e-01 90.7% 48.7%
3482243 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.67 54.0 5.37e-01 85.2% 87.3%
5049697 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 52.0 4.12e-01 90.7% 40.0%
3479024 263.1.1.0 a+b three layers › SRF-like › SRF-like › SRF-like 0.66 52.0 5.23e-01 85.2% 87.3%
5044629 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 52.0 4.14e-01 96.3% 41.7%
4929825 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 57.0 4.39e-01 96.3% 46.2%
3600598 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 53.0 4.01e-01 90.7% 38.6%
4998154 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 53.0 4.02e-01 90.7% 42.2%
4002901 223.2.1.12 a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.65 52.0 4.04e-01 96.3% 38.6%
3614763 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.64 57.0 4.37e-01 98.1% 53.3%
5050210 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.64 52.0 4.16e-01 96.3% 46.7%
3209881 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.64 45.0 2.57e-01 92.6% 7.0%
3965099 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.64 55.0 4.32e-01 92.6% 65.7%
4969727 230.1.1.3 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.64 47.0 3.38e-01 81.5% 84.0%
4479376 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.63 57.0 4.42e-01 100.0% 65.2%
223484 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.63 55.0 4.31e-01 92.6% 65.7%
4959371 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.63 51.0 3.92e-01 90.7% 44.0%
4940325 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.63 47.0 4.61e-01 81.5% 88.3%
4143716 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.62 57.0 4.45e-01 100.0% 58.2%
3970136 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.62 52.0 4.15e-01 92.6% 65.7%
4981604 230.1.1.3 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.61 46.0 3.42e-01 85.2% 85.8%
3733997 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.61 55.0 4.15e-01 100.0% 51.2%
4515677 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.61 54.0 4.24e-01 100.0% 56.1%
4930498 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 49.0 4.03e-01 90.7% 54.0%
3394732 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.60 52.0 4.40e-01 98.1% 60.0%
4073557 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.59 53.0 4.29e-01 100.0% 61.0%
3607176 101.17.1.4 alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › HU-CCDC81_euk_2 0.58 47.0 4.13e-01 100.0% 58.5%
4269649 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.58 52.0 4.06e-01 98.1% 64.5%
3926232 3409.1.1.0 a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain 0.58 52.0 3.70e-01 98.1% 76.0%
5035465 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.58 48.0 3.89e-01 96.3% 49.6%
3513247 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.58 45.0 3.98e-01 96.3% 58.9%
4427813 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.58 53.0 4.17e-01 100.0% 58.1%
3250073 592.7.1.0 alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.57 47.0 3.56e-01 94.4% 40.7%
5076084 230.1.1.3 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.57 41.0 3.15e-01 81.5% 89.9%
1413813 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.56 35.0 3.48e-01 75.9% 61.8%
4973785 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.56 44.0 3.52e-01 90.7% 47.8%
5012906 2498.2.1.6 mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › S_layer_C 0.55 45.0 2.95e-01 90.7% 22.4%
3384014 109.4.1.1269 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.54 39.0 3.23e-01 75.9% 75.8%
3580501 101.46.1.1 alpha arrays › HTH › Parafibromin N-terminal domain › Parafibromin N-terminal domain › CDC73_N 0.52 37.0 3.03e-01 77.8% 47.3%
3589480 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.52 42.0 3.10e-01 90.7% 37.2%
3988610 2008.1.1.15 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N 0.52 38.0 3.04e-01 90.7% 34.6%
4560753 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.51 38.0 3.01e-01 87.0% 38.3%
3422937 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.51 37.0 3.64e-01 81.5% 73.3%
5012768 5.1.10.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › DUF6849 0.51 34.0 3.29e-01 75.9% 58.5%
3946976 2003.1.2.161 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › PF30338 0.51 40.0 2.76e-01 85.2% 26.3%