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KC821622.1AGO48865.1Phi46-3_gp121__00121

Bact-Vir

KC821622.1__AGO48865.1__Phi46-3_gp121__00121

Identity

Accession:: KC821622 ↗
Kingdom:: phage

Quality

81.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pachyviridae› Bacelvirus› Cellulophaga_phage_phi46:3

TaxID: 1327985

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-225

PDB

Domain cluster: rep: OM112209.1__UKL29972.1__X__00002__D938-1119

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2eh3A02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.53	29.0	3.81e-01	88.8%	97.5%
5gl7A01	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.52	28.0	3.20e-01	71.7%	68.1%
1fioA00	1.20.58.70	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	36.0	3.87e-01	79.4%	83.2%

D2 medium residues 226-354_459-491

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3gwlA00	1.20.120.310	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain	0.55	29.0	3.48e-01	77.8%	76.4%
4z7fB00	1.10.1760.20	Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 ›	0.53	38.0	3.79e-01	100.0%	70.8%
2pfdA03	1.20.120.680	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle	0.52	37.0	3.42e-01	72.2%	91.6%
4ks9A01	1.20.140.90	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain	0.50	29.0	3.22e-01	96.3%	70.6%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4839189	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.58	36.0	4.06e-01	75.9%	82.0%
3423437	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.57	42.0	4.18e-01	75.3%	81.8%
3329616	109.4.1.359 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo70_C	0.55	36.0	3.38e-01	75.9%	51.7%
4874447	5059.1.1.2 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Multi_Drug_Res	0.54	34.0	4.16e-01	76.5%	100.0%
5064698	150.1.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin	0.53	28.0	3.63e-01	90.7%	91.1%
4942614	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.52	38.0	3.82e-01	99.4%	72.2%
3640304	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	36.0	2.83e-01	72.8%	32.9%
3512606	604.5.1.31 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TRAM_LAG1_CLN8	0.52	47.0	3.81e-01	99.4%	86.6%
3483425	3745.1.1.0 ↗	alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger	0.51	45.0	3.35e-01	96.9%	83.3%
4379647	604.39.1.0 ↗	alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters	0.51	39.0	3.84e-01	100.0%	75.3%
3267042	5054.1.1.17 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TRAM_LAG1_CLN8	0.51	47.0	4.07e-01	100.0%	93.1%
5034253	5058.1.1.0 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region	0.51	30.0	2.87e-01	98.8%	48.6%
3273047	604.5.1.31 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TRAM_LAG1_CLN8	0.50	44.0	3.91e-01	93.8%	93.9%

D3 medium residues 355-458

PDB

Domain cluster: representative

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3640734	2008.1.1.144 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27653	0.52	46.0	3.31e-01	100.0%	93.8%

D4 medium residues 492-623

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1sqgA01	1.10.940.10	Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like	0.61	43.0	4.26e-01	72.0%	97.9%
3mzvA00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.55	46.0	3.57e-01	92.4%	86.1%
5x9vA01	1.10.560.10	Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain	0.54	43.0	3.61e-01	86.4%	93.5%
1grlB01	1.10.560.10	Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain	0.54	40.0	3.38e-01	79.5%	90.6%
1uddA00	1.20.910.10	Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like	0.52	42.0	3.59e-01	86.4%	76.7%
3r2cA00	1.10.940.10	Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like	0.51	40.0	4.01e-01	83.3%	99.3%
3mvuA00	1.20.910.10	Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like	0.50	40.0	3.44e-01	86.4%	77.2%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3223392	188.1.1.1 ↗	alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep	0.55	41.0	3.35e-01	80.3%	54.1%
3597275	633.21.1.0 ↗	alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107	0.54	35.0	3.72e-01	81.8%	74.8%
3925746	3065.1.1.2 ↗	alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Gp-FAR-1	0.52	40.0	3.97e-01	81.1%	80.7%