←Back to structures

KC821624.1__AGO48898.1__Phi14-2_gp020__00020

Bact-Vir

KC821624.1__AGO48898.1__Phi14-2_gp020__00020

Identity

Accession:
KC821624 ↗
Kingdom:
phage

Quality

81.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Crassvirales› Steigviridae› Akihdevirus› Cellulophaga_phage_phi14:2

TaxID: 1327990

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-51
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kfvA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 56.0 4.57e-01 100.0% 85.0%
2hvfA00 3.40.5.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain 0.65 46.0 4.61e-01 100.0% 75.0%
4v19I01 3.40.5.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain 0.64 45.0 4.41e-01 100.0% 68.4%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 54.0 5.08e-01 100.0% 93.8%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 55.0 5.10e-01 100.0% 95.3%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 54.0 5.27e-01 100.0% 100.0%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 53.0 5.17e-01 100.0% 94.7%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.62 52.0 4.69e-01 100.0% 90.5%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 52.0 5.04e-01 100.0% 96.6%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 53.0 5.05e-01 100.0% 94.9%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 52.0 5.08e-01 100.0% 100.0%
7k9cA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 51.0 4.37e-01 100.0% 58.1%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 49.0 4.34e-01 100.0% 68.8%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 48.0 4.63e-01 100.0% 93.2%
6ijfC01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.55 41.0 3.50e-01 100.0% 46.2%
3ls9A01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.55 44.0 3.55e-01 96.0% 86.6%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4068274 4076.1.1.1 ↗ a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Ribosomal_L9_N 0.68 49.0 4.82e-01 100.0% 70.9%
4036040 4076.1.1.1 ↗ a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Ribosomal_L9_N 0.68 49.0 4.81e-01 100.0% 70.9%
3788443 4076.1.1.1 ↗ a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Ribosomal_L9_N 0.68 49.0 4.92e-01 100.0% 78.0%
3958264 4076.1.1.0 ↗ a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.67 48.0 4.70e-01 100.0% 70.9%
2883137 4076.1.1.1 ↗ a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Ribosomal_L9_N 0.65 46.0 4.43e-01 100.0% 65.0%
3188732 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 54.0 4.81e-01 100.0% 76.0%
3396354 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.60 51.0 3.97e-01 100.0% 83.3%
3906073 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 3.60e-01 100.0% 80.0%
4944185 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.53 41.0 3.89e-01 100.0% 70.8%
D2 high residues 56-151
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c12A01 2.30.30.910 Mainly Beta › Roll › SH3 type barrels. › 0.80 41.0 5.48e-01 100.0% 94.1%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 45.0 4.47e-01 79.2% 65.0%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 40.0 4.81e-01 100.0% 93.5%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 43.0 4.77e-01 88.5% 84.2%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.63 45.0 5.07e-01 97.9% 95.9%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 37.0 4.49e-01 96.9% 91.9%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.61 56.0 4.77e-01 100.0% 80.7%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 33.0 3.84e-01 100.0% 78.1%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.60 39.0 4.29e-01 100.0% 83.1%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 37.0 4.27e-01 99.0% 89.7%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 41.0 3.64e-01 72.9% 83.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 38.0 4.06e-01 100.0% 77.1%
4jrnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 38.0 3.41e-01 70.8% 82.3%
2cg7A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.53 26.0 3.49e-01 85.4% 95.7%
2uzgA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 32.0 3.29e-01 87.5% 61.1%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 43.0 3.44e-01 94.8% 71.8%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.50 30.0 3.37e-01 97.9% 78.1%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3230533 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 41.0 5.86e-01 100.0% 100.0%
4026958 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 44.0 5.68e-01 97.9% 98.2%
3485965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 41.0 5.20e-01 99.0% 90.0%
3535278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 41.0 5.12e-01 100.0% 91.7%
3702154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 43.0 4.84e-01 82.3% 80.0%
3300074 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 38.0 4.92e-01 96.9% 96.3%
3866038 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.68 42.0 4.50e-01 100.0% 70.6%
3259547 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 45.0 4.19e-01 100.0% 55.7%
3511375 4.1.1.349 ↗ beta barrels › SH3 › SH3 › SH3 › ROF 0.68 46.0 4.87e-01 100.0% 77.6%
3855038 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.67 49.0 4.08e-01 77.1% 88.1%
3867207 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.65 44.0 4.50e-01 100.0% 70.5%
3848399 4.8.1.24 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th 0.65 45.0 5.13e-01 75.0% 97.1%
3918299 4.1.1.376 ↗ beta barrels › SH3 › SH3 › SH3 › Chromo_MORC2_6th 0.65 45.0 5.18e-01 76.0% 98.6%
4975714 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 36.0 4.60e-01 96.9% 98.2%
3300051 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.62 37.0 4.12e-01 99.0% 76.0%
3279470 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.61 40.0 4.14e-01 100.0% 71.1%
5000741 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.61 38.0 4.39e-01 100.0% 92.3%
3460287 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.60 55.0 4.60e-01 100.0% 67.5%
3630782 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.59 44.0 3.76e-01 100.0% 51.0%
3236982 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 54.0 4.79e-01 100.0% 84.4%
3884131 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 53.0 4.99e-01 100.0% 87.0%
3878271 101.1.2.284 ↗ alpha arrays › HTH › HTH › winged helix domain › WAC_Acf1_DNA_bd 0.57 45.0 3.81e-01 96.9% 52.3%
4381868 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.55 35.0 3.58e-01 100.0% 66.7%
4666540 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.54 33.0 3.54e-01 100.0% 69.4%
3740221 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.54 45.0 3.76e-01 100.0% 53.8%
1527468 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.53 47.0 4.49e-01 96.9% 95.5%
D3 medium residues 157-254
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.53 36.0 3.63e-01 73.5% 70.1%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3168997 4076.1.1.0 ↗ a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.53 34.0 3.72e-01 89.8% 78.8%
3923874 109.4.1.37 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BRO1 0.51 37.0 2.61e-01 77.6% 93.2%