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KC821624.1__AGO48989.1__Phi14-2_gp111__00111

Bact-Vir

KC821624.1__AGO48989.1__Phi14-2_gp111__00111

Identity

Accession:
KC821624 ↗
Kingdom:
phage

Quality

86.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Crassvirales› Steigviridae› Akihdevirus› Cellulophaga_phage_phi14:2

TaxID: 1327990

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-58
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u50C02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.78 49.0 5.69e-01 70.9% 100.0%
7ob9B02 3.90.1800.10 Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain 0.74 58.0 4.73e-01 85.5% 86.3%
2jneA00 2.10.290.10 Mainly Beta › Ribbon › Rubredoxin-like › YfgJ-like 0.66 46.0 4.30e-01 74.5% 62.0%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 42.0 3.43e-01 74.5% 63.0%
1twfB08 3.90.1800.10 Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain 0.60 51.0 4.52e-01 100.0% 67.1%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 38.0 3.72e-01 70.9% 76.9%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 32.0 2.59e-01 100.0% 25.0%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 37.0 2.71e-01 72.7% 86.7%
4gr5C01 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.52 41.0 4.01e-01 100.0% 81.2%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 38.0 3.14e-01 85.5% 70.1%
2kcjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 36.0 3.00e-01 78.2% 87.0%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3856952 375.1.1.194 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4503 0.81 56.0 6.43e-01 72.7% 100.0%
4934260 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.79 68.0 6.91e-01 94.5% 100.0%
3699533 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.73 59.0 4.00e-01 90.9% 30.7%
4397965 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 50.0 3.68e-01 78.2% 30.0%
5004736 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 55.0 5.44e-01 98.2% 93.1%
7620 4043.1.1.1 ↗ a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 0.62 53.0 4.27e-01 98.2% 55.0%
1223288 4246.1.1.0 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit 0.62 53.0 5.07e-01 96.4% 90.5%
3172677 2005.1.1.40 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.59 48.0 2.82e-01 98.2% 31.8%
3955489 2484.1.1.211 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB 0.58 45.0 3.08e-01 87.3% 27.1%
3708552 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.57 44.0 4.03e-01 87.3% 66.7%
3595905 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.56 43.0 3.32e-01 87.3% 37.0%
3624588 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.56 45.0 4.07e-01 92.7% 66.3%
3368246 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.56 37.0 4.16e-01 85.5% 100.0%
3578353 2005.1.1.29 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g 0.55 44.0 2.83e-01 98.2% 40.6%
3718455 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.55 36.0 2.88e-01 96.4% 31.6%
3718581 386.1.1.114 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C3HC4_2 0.55 43.0 3.50e-01 87.3% 46.4%
3393739 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.55 40.0 4.40e-01 78.2% 100.0%
3923801 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 36.0 3.09e-01 100.0% 38.9%
3372592 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.54 39.0 3.57e-01 81.8% 63.7%
3935471 4292.1.1.0 ↗ a+b two layers › FlaG-like › FlaG-related › FlaG-related 0.54 40.0 3.53e-01 81.8% 88.2%
3947081 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.54 35.0 3.42e-01 98.2% 57.8%
3497948 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 35.0 3.18e-01 94.5% 48.0%
3424116 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.53 41.0 3.40e-01 94.5% 65.0%
3264086 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 34.0 2.76e-01 80.0% 31.7%
4003778 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 35.0 2.34e-01 74.5% 14.4%
3934797 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.51 42.0 3.27e-01 96.4% 44.4%
3661090 376.1.1.29 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 0.51 39.0 3.56e-01 92.7% 61.3%
3211320 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 36.0 2.12e-01 78.2% 8.6%