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KC821625.1__AGO49108.1__Phi13-1_gp097__00097
Bact-VirKC821625.1__AGO49108.1__Phi13-1_gp097__00097
Identity
- Accession:
- KC821625 ↗
- Kingdom:
- phage
Quality
93.5
mean pLDDT
Taxonomy
TaxID: 1327992
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-52
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sb7A02 | 3.30.2340.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › TruD, insertion domain | 0.62 | 46.0 | 3.49e-01 | 90.4% | 31.6% |
| 2cw5A02 | 2.40.30.90 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like | 0.62 | 52.0 | 4.46e-01 | 98.1% | 97.8% |
| 4zevA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.62 | 52.0 | 4.24e-01 | 100.0% | 92.5% |
| 2rbkA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.60 | 48.0 | 4.09e-01 | 100.0% | 94.1% |
| 3daoA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.60 | 49.0 | 4.02e-01 | 100.0% | 94.5% |
| 2b30A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.58 | 47.0 | 3.90e-01 | 100.0% | 91.7% |
| 1vajA02 | 3.30.1490.150 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Hypothetical protein ph0010; domain 2 | 0.58 | 48.0 | 4.42e-01 | 100.0% | 90.5% |
| 2hf2B02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.56 | 44.0 | 3.74e-01 | 100.0% | 94.4% |
| 3npfA03 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.56 | 46.0 | 3.35e-01 | 98.1% | 44.1% |
| 4pbcA02 | 3.20.10.10 | Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 | 0.55 | 42.0 | 3.28e-01 | 88.5% | 54.5% |
| 3pgvA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.54 | 45.0 | 3.76e-01 | 100.0% | 95.0% |
| 3tsnA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.53 | 41.0 | 2.56e-01 | 90.4% | 50.3% |
| 1ti2A04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.53 | 43.0 | 3.25e-01 | 100.0% | 94.2% |
| 7abaA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.53 | 39.0 | 2.46e-01 | 86.5% | 97.8% |
| 2yvlA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.52 | 44.0 | 4.30e-01 | 98.1% | 100.0% |
| 5u3fA02 | 3.20.10.10 | Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 | 0.51 | 39.0 | 2.88e-01 | 96.2% | 72.2% |
| 1kg1A02 | 2.30.30.460 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 31.0 | 3.65e-01 | 71.2% | 100.0% |
| 3udcA02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 39.0 | 3.97e-01 | 88.5% | 98.0% |
| 3gmgA00 | 3.30.70.1880 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function DUF881 | 0.50 | 42.0 | 3.17e-01 | 100.0% | 42.0% |
| 3k0xA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 35.0 | 2.98e-01 | 76.9% | 57.6% |
| 2gtlN02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 36.0 | 2.68e-01 | 82.7% | 70.6% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3988613 | 3012.1.1.4 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 | 0.68 | 57.0 | 4.61e-01 | 100.0% | 93.6% |
| 4025019 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.63 | 51.0 | 4.04e-01 | 100.0% | 96.2% |
| 4956980 | 1.1.4.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C | 0.61 | 51.0 | 4.32e-01 | 100.0% | 97.9% |
| 4324691 | 4959.1.1.1 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 | 0.59 | 46.0 | 3.38e-01 | 92.3% | 93.3% |
| 5036592 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.58 | 47.0 | 4.30e-01 | 96.2% | 88.0% |
| 3961546 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.58 | 48.0 | 4.55e-01 | 98.1% | 93.8% |
| 3289802 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.58 | 41.0 | 2.40e-01 | 78.8% | 13.1% |
| 4944045 | 4.17.1.2 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › Asparaginase | 0.57 | 47.0 | 4.34e-01 | 96.2% | 91.4% |
| 4952887 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 46.0 | 4.61e-01 | 94.2% | 92.7% |
| 5063537 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.57 | 46.0 | 4.46e-01 | 96.2% | 90.0% |
| 4147290 | 4.1.1.364 ↗ | beta barrels › SH3 › SH3 › SH3 › GatD_N | 0.55 | 43.0 | 4.10e-01 | 92.3% | 80.0% |
| 4538536 | 2006.1.1.37 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP+Hydrolase_3 | 0.55 | 45.0 | 2.94e-01 | 100.0% | 39.6% |
| 4990359 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.55 | 44.0 | 4.21e-01 | 98.1% | 90.8% |
| 4301105 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.55 | 39.0 | 3.21e-01 | 76.9% | 99.0% |
| 4948433 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.54 | 44.0 | 4.18e-01 | 98.1% | 94.1% |
| 4959192 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.54 | 42.0 | 4.05e-01 | 96.2% | 87.7% |
| 5017848 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.54 | 43.0 | 4.07e-01 | 98.1% | 87.1% |
| 4971267 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.54 | 38.0 | 2.94e-01 | 78.8% | 33.8% |
| 5029643 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.53 | 42.0 | 3.86e-01 | 98.1% | 87.5% |
| 4961138 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.53 | 42.0 | 3.91e-01 | 98.1% | 92.0% |
| 3969250 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.52 | 39.0 | 2.89e-01 | 84.6% | 65.3% |
| 4946925 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.52 | 43.0 | 3.89e-01 | 98.1% | 94.7% |
| 4995671 | 3115.1.1.12 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 | 0.52 | 38.0 | 3.92e-01 | 84.6% | 84.0% |
| 4930010 | 1.1.7.141 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MazE_antitoxin | 0.52 | 44.0 | 3.68e-01 | 100.0% | 75.8% |
| 4182977 | 4.1.1.297 ↗ | beta barrels › SH3 › SH3 › SH3 › YajC | 0.51 | 40.0 | 3.94e-01 | 98.1% | 91.7% |
| 5005032 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.51 | 41.0 | 3.84e-01 | 98.1% | 88.6% |
| 5029894 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.51 | 33.0 | 2.48e-01 | 88.5% | 21.2% |
| 5062992 | 11.1.1.33 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arch_flagellin | 0.51 | 39.0 | 3.14e-01 | 100.0% | 80.4% |
| 5011380 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.50 | 38.0 | 2.48e-01 | 86.5% | 84.8% |
D2
medium
residues 53-124
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3e48B02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.50 | 40.0 | 3.55e-01 | 98.6% | 60.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3990360 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.52 | 40.0 | 2.98e-01 | 91.7% | 28.4% |
| 3218298 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.52 | 41.0 | 2.55e-01 | 90.3% | 20.6% |
| 5075253 | 2003.1.1.39 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Sacchrp_dh_NADP | 0.52 | 41.0 | 2.72e-01 | 94.4% | 85.7% |
| 3991811 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.52 | 41.0 | 2.87e-01 | 90.3% | 35.7% |
| 4253727 | 109.4.1.835 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INT10 | 0.51 | 43.0 | 2.74e-01 | 98.6% | 32.3% |