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KC821626.1__AGO49139.1__Phi39-1_gp24__00024
Bact-VirKC821626.1__AGO49139.1__Phi39-1_gp24__00024
Identity
- Accession:
- KC821626 ↗
- Kingdom:
- phage
Quality
81.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 47-106
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ed7A00 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.72 | 48.0 | 5.33e-01 | 76.7% | 91.1% |
| 4ic5A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 40.0 | 3.40e-01 | 73.3% | 79.8% |
| 2eqmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 34.0 | 3.62e-01 | 70.0% | 66.0% |
| 4a4kA02 | 2.30.30.1160 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 45.0 | 3.54e-01 | 88.3% | 40.6% |
| 6b9tF02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 36.0 | 3.01e-01 | 75.0% | 36.7% |
| 1icwB00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 32.0 | 3.11e-01 | 71.7% | 50.0% |
| 2ablA02 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.54 | 35.0 | 3.08e-01 | 83.3% | 41.2% |
| 2cx0A02 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.54 | 47.0 | 4.22e-01 | 98.3% | 96.4% |
| 1zybA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 42.0 | 3.01e-01 | 93.3% | 67.3% |
| 1jb3A00 | 2.40.50.120 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 36.0 | 2.84e-01 | 73.3% | 78.0% |
| 2cqaA01 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.51 | 34.0 | 3.27e-01 | 70.0% | 78.4% |
| 1dgjA04 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.51 | 35.0 | 2.58e-01 | 76.7% | 27.2% |
| 6ro0D00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 37.0 | 3.08e-01 | 78.3% | 93.6% |
| 2x45A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 35.0 | 2.81e-01 | 76.7% | 56.9% |
| 3w15A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 39.0 | 2.45e-01 | 85.0% | 18.0% |
| 1lf6A01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.50 | 39.0 | 2.55e-01 | 85.0% | 39.2% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4024668 | 2004.1.1.211 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CLP1_P | 0.71 | 55.0 | 3.62e-01 | 83.3% | 26.2% |
| 3300189 | 1.1.9.34 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF26292 | 0.62 | 47.0 | 4.15e-01 | 83.3% | 55.6% |
| 4403731 | 7506.1.1.1 ↗ | a/b three-layered sandwiches › N-terminal domain of GerK3 germinant receptor › N-terminal domain of GerK3 germinant receptor › N-terminal domain of GerK3 germinant receptor › GerA | 0.60 | 42.0 | 3.44e-01 | 75.0% | 73.3% |
| 3939197 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 41.0 | 2.55e-01 | 75.0% | 13.8% |
| 3264377 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.57 | 36.0 | 2.94e-01 | 75.0% | 31.7% |
| 2526338 | 7506.1.1.1 ↗ | a/b three-layered sandwiches › N-terminal domain of GerK3 germinant receptor › N-terminal domain of GerK3 germinant receptor › N-terminal domain of GerK3 germinant receptor › GerA | 0.55 | 38.0 | 3.07e-01 | 73.3% | 70.3% |
| 3599542 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 41.0 | 3.42e-01 | 83.3% | 92.7% |
| 3172156 | 2.1.1.44 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 | 0.54 | 37.0 | 3.15e-01 | 71.7% | 83.8% |
| 3574563 | 220.1.1.61 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 | 0.54 | 33.0 | 2.68e-01 | 75.0% | 29.2% |
| 3761318 | 4.1.1.253 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4537 | 0.54 | 41.0 | 3.90e-01 | 80.0% | 75.7% |
| 5059871 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 37.0 | 2.74e-01 | 76.7% | 49.4% |
| 3993563 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 44.0 | 2.67e-01 | 100.0% | 18.9% |
| 3819824 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.51 | 42.0 | 2.87e-01 | 96.7% | 56.5% |
| None | — | 0.50 | 42.0 | 2.94e-01 | 100.0% | 61.3% | |
| 3997189 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.50 | 35.0 | 3.22e-01 | 76.7% | 90.6% |