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KC821626.1__AGO49161.1__Phi39-1_gp46__00046
Bact-VirKC821626.1__AGO49161.1__Phi39-1_gp46__00046
Identity
- Accession:
- KC821626 ↗
- Kingdom:
- phage
Quality
80.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-45
Domain cluster:
representative
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tqqA02 | 3.10.25.10 | Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain | 0.69 | 55.0 | 4.15e-01 | 90.2% | 67.0% |
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.68 | 56.0 | 4.78e-01 | 100.0% | 79.2% |
| 1pduA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.67 | 52.0 | 3.22e-01 | 85.4% | 15.7% |
| 2ksnA01 | 1.20.225.20 | Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Ub domain-containing protein, DC-UbP/UBTD2, N-terminal domain | 0.67 | 46.0 | 3.79e-01 | 73.2% | 39.7% |
| 4uoyA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.66 | 50.0 | 3.18e-01 | 82.9% | 49.5% |
| 7r71A01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.66 | 50.0 | 4.44e-01 | 85.4% | 84.4% |
| 1wzoA01 | 2.30.30.370 | Mainly Beta › Roll › SH3 type barrels. › FAH | 0.62 | 48.0 | 4.92e-01 | 85.4% | 90.0% |
| 3hxlA04 | 3.30.1370.220 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.62 | 40.0 | 3.32e-01 | 100.0% | 34.2% |
| 2l0bA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.61 | 44.0 | 3.60e-01 | 85.4% | 63.7% |
| 3oqbH02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.61 | 47.0 | 3.04e-01 | 95.1% | 38.1% |
| 2pb2B01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.61 | 46.0 | 3.19e-01 | 82.9% | 70.4% |
| 2qntA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.60 | 50.0 | 3.69e-01 | 100.0% | 82.8% |
| 1d8cA02 | 2.170.170.11 | Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain | 0.59 | 41.0 | 2.97e-01 | 75.6% | 30.5% |
| 2fp3A01 | 3.40.50.1460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 47.0 | 3.00e-01 | 95.1% | 20.3% |
| 3nkdA01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.59 | 43.0 | 3.48e-01 | 80.5% | 39.3% |
| 3kkjA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 40.0 | 2.81e-01 | 73.2% | 51.0% |
| 4w8kA01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.59 | 42.0 | 3.33e-01 | 80.5% | 35.2% |
| 1xocA03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.58 | 50.0 | 3.14e-01 | 100.0% | 67.4% |
| 4pdyA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 48.0 | 3.73e-01 | 100.0% | 77.8% |
| 1fc4A02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.58 | 45.0 | 3.17e-01 | 85.4% | 73.5% |
| 3hv8A00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.57 | 43.0 | 2.80e-01 | 92.7% | 22.7% |
| 3kbgA03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 45.0 | 4.10e-01 | 87.8% | 85.7% |
| 1jk4A00 | 2.60.9.10 | Mainly Beta › Sandwich › Neurophysin II; Chain A › Neurohypophysial hormone domain | 0.57 | 39.0 | 3.28e-01 | 78.0% | 39.2% |
| 4fb5A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.56 | 45.0 | 2.87e-01 | 100.0% | 83.1% |
| 1fcdA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 40.0 | 2.86e-01 | 78.0% | 91.4% |
| 3ef6A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 37.0 | 2.82e-01 | 70.7% | 89.2% |
| 1l6rA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.55 | 41.0 | 3.01e-01 | 100.0% | 63.1% |
| 2f4qA01 | 3.30.66.10 | Alpha Beta › 2-Layer Sandwich › Viral Topoisomerase I › DNA topoisomerase I domain | 0.55 | 41.0 | 3.45e-01 | 82.9% | 54.2% |
| 2lxhC00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.55 | 42.0 | 3.86e-01 | 90.2% | 77.6% |
| 4o1pD02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.55 | 43.0 | 2.78e-01 | 100.0% | 41.9% |
| 4eqsA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 36.0 | 2.62e-01 | 70.7% | 73.4% |
| 2ra9A02 | 2.30.270.10 | Mainly Beta › Roll › duf1285 protein fold › duf1285 protein | 0.54 | 37.0 | 3.32e-01 | 80.5% | 52.1% |
| 3lfjB00 | 3.40.35.10 | Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component | 0.54 | 42.0 | 2.88e-01 | 90.2% | 47.0% |
| 2yf0A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 39.0 | 3.21e-01 | 82.9% | 72.4% |
| 4fk1A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 36.0 | 2.85e-01 | 73.2% | 68.8% |
| 3bs1A00 | 2.40.50.1020 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain | 0.53 | 40.0 | 3.04e-01 | 80.5% | 36.9% |
| 5xgbA03 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.53 | 41.0 | 2.66e-01 | 100.0% | 24.5% |
| 2iz4A01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.53 | 40.0 | 3.90e-01 | 87.8% | 93.9% |
| 4nvsA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.53 | 39.0 | 2.85e-01 | 92.7% | 65.8% |
| 5ttjA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 42.0 | 2.76e-01 | 100.0% | 64.7% |
| 3hr8A02 | 3.30.250.10 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain | 0.53 | 43.0 | 3.68e-01 | 100.0% | 81.3% |
| 6cthA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.52 | 41.0 | 2.77e-01 | 100.0% | 44.3% |
| 1g2nA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.51 | 38.0 | 2.49e-01 | 92.7% | 56.9% |
| 3pfmA00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.51 | 41.0 | 2.62e-01 | 100.0% | 23.5% |
| 4azsA03 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.50 | 33.0 | 2.35e-01 | 95.1% | 19.0% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5062655 | 2003.1.2.7 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 | 0.72 | 50.0 | 2.89e-01 | 73.2% | 11.6% |
| 3697618 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.68 | 50.0 | 4.19e-01 | 82.9% | 81.3% |
| 3827578 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.67 | 49.0 | 4.29e-01 | 80.5% | 81.5% |
| 3880486 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.67 | 48.0 | 4.36e-01 | 78.0% | 83.1% |
| 2120488 | 7581.1.1.2 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ketoacyl-synt | 0.67 | 54.0 | 3.12e-01 | 95.1% | 10.5% |
| 3504834 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 55.0 | 4.97e-01 | 95.1% | 94.8% |
| 3825395 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.65 | 51.0 | 4.33e-01 | 87.8% | 92.9% |
| 4601962 | 4952.1.1.2 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_aromatic | 0.65 | 52.0 | 3.31e-01 | 100.0% | 26.5% |
| 4316812 | 321.1.1.6 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Pup_ligase | 0.65 | 52.0 | 3.21e-01 | 92.7% | 62.6% |
| 3683843 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.65 | 49.0 | 3.89e-01 | 85.4% | 61.1% |
| 3960797 | 7567.1.1.1 ↗ | a/b three-layered sandwiches › LmbE-like › LmbE-like › LmbE-like › PIG-L | 0.64 | 49.0 | 3.26e-01 | 90.2% | 19.5% |
| 3373813 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.63 | 46.0 | 2.60e-01 | 75.6% | 26.9% |
| 4984852 | 7579.1.1.3 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 | 0.63 | 48.0 | 3.04e-01 | 87.8% | 14.5% |
| 3328008 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.62 | 51.0 | 4.18e-01 | 92.7% | 77.2% |
| 3330329 | 2008.1.1.31 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › VRR_NUC | 0.62 | 52.0 | 3.28e-01 | 100.0% | 82.2% |
| 4517008 | 4.1.1.301 ↗ | beta barrels › SH3 › SH3 › SH3 › MJ1316 | 0.61 | 48.0 | 4.12e-01 | 100.0% | 91.3% |
| 5011007 | 4.1.1.301 ↗ | beta barrels › SH3 › SH3 › SH3 › MJ1316 | 0.61 | 50.0 | 4.27e-01 | 100.0% | 91.9% |
| 4438245 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.61 | 41.0 | 3.15e-01 | 70.7% | 48.4% |
| 5019670 | 7523.1.1.3 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 | 0.60 | 48.0 | 3.04e-01 | 92.7% | 64.8% |
| 3973165 | 818.1.1.0 ↗ | a+b two layers › DNA topoisomerase I domain › DNA topoisomerase I domain › DNA topoisomerase I domain | 0.60 | 41.0 | 3.37e-01 | 73.2% | 42.5% |
| 3802019 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.60 | 49.0 | 3.19e-01 | 100.0% | 30.2% |
| 3887522 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.59 | 44.0 | 3.67e-01 | 87.8% | 70.6% |
| 3716134 | 7575.1.1.0 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like | 0.57 | 44.0 | 2.79e-01 | 95.1% | 20.0% |
| 3869151 | 2.1.1.37 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind | 0.57 | 43.0 | 3.08e-01 | 87.8% | 49.6% |
| 3700745 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 42.0 | 4.07e-01 | 85.4% | 90.0% |
| 3351350 | 206.1.1.74 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr | 0.56 | 47.0 | 2.84e-01 | 100.0% | 17.2% |
| 4023181 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.55 | 42.0 | 2.76e-01 | 95.1% | 42.6% |
| 3683391 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.55 | 46.0 | 2.90e-01 | 100.0% | 20.9% |
| 3823533 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.55 | 47.0 | 2.76e-01 | 100.0% | 13.4% |
| 3593911 | 217.1.1.0 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain | 0.55 | 41.0 | 2.48e-01 | 85.4% | 12.8% |
| 4335576 | 2006.1.1.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase | 0.54 | 39.0 | 2.73e-01 | 100.0% | 50.2% |
| 3987902 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.53 | 39.0 | 3.87e-01 | 80.5% | 84.4% |
| 3601350 | 2006.1.6.19 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › IML1 | 0.53 | 39.0 | 2.55e-01 | 87.8% | 92.9% |
| 3382134 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 43.0 | 2.56e-01 | 100.0% | 13.5% |
| 3449773 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.52 | 42.0 | 2.55e-01 | 100.0% | 15.2% |
| 4449992 | 7577.1.1.2 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_3 | 0.52 | 35.0 | 2.10e-01 | 85.4% | 8.3% |
| 3791889 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.52 | 34.0 | 2.82e-01 | 85.4% | 33.8% |
| 3349852 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 45.0 | 2.68e-01 | 100.0% | 17.3% |
| 3495420 | 5054.1.1.86 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lips | 0.51 | 41.0 | 2.77e-01 | 92.7% | 76.7% |
| 4663840 | 7579.1.1.101 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, Abhydrolase_3, BD-FAE | 0.51 | 39.0 | 2.42e-01 | 97.6% | 68.6% |
| 3813576 | 7579.1.1.101 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, Abhydrolase_3, BD-FAE | 0.50 | 39.0 | 2.47e-01 | 100.0% | 66.9% |