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KC821633.1__AGO49674.1__Phi13-2_gp064__00064
Bact-VirKC821633.1__AGO49674.1__Phi13-2_gp064__00064
Identity
- Accession:
- KC821633 ↗
- Kingdom:
- phage
Quality
94.1
mean pLDDT
Taxonomy
TaxID: 1328030
Cluster
View cluster (23 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-53
Domain cluster:
rep: MK448235.1__QBQ71520.1__X__00048__D4-56
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x4jA01 | 2.30.30.600 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 60.0 | 4.84e-01 | 100.0% | 66.7% |
| 3qdfA01 | 2.30.30.370 | Mainly Beta › Roll › SH3 type barrels. › FAH | 0.69 | 50.0 | 4.84e-01 | 80.0% | 98.3% |
| 3pvlA04 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.69 | 52.0 | 4.22e-01 | 84.0% | 76.8% |
| 4gzuB03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.67 | 50.0 | 4.20e-01 | 84.0% | 79.1% |
| 6bhdA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 53.0 | 4.98e-01 | 92.0% | 85.7% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 49.0 | 4.63e-01 | 84.0% | 83.1% |
| 1ub4A00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 51.0 | 4.26e-01 | 94.0% | 79.6% |
| 2qggA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.66 | 56.0 | 4.65e-01 | 100.0% | 84.9% |
| 1f39A00 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.65 | 56.0 | 4.50e-01 | 100.0% | 54.5% |
| 1b23P03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.63 | 52.0 | 4.35e-01 | 96.0% | 76.6% |
| 2cofA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 47.0 | 3.81e-01 | 84.0% | 70.1% |
| 3mpxA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 46.0 | 3.87e-01 | 84.0% | 73.2% |
| 3cpxA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.62 | 51.0 | 4.91e-01 | 100.0% | 96.8% |
| 2k3yA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 48.0 | 3.79e-01 | 88.0% | 81.7% |
| 4p5nA00 | 2.30.30.1060 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 50.0 | 4.51e-01 | 98.0% | 93.2% |
| 4x8iA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.60 | 50.0 | 4.34e-01 | 100.0% | 96.5% |
| 1kjzA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.60 | 48.0 | 4.08e-01 | 96.0% | 71.7% |
| 2wyrB02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.60 | 48.0 | 4.24e-01 | 100.0% | 100.0% |
| 2m6nA00 | 2.20.25.20 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.58 | 37.0 | 3.85e-01 | 72.0% | 71.7% |
| 2fivA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.57 | 42.0 | 3.30e-01 | 82.0% | 61.9% |
| 2kd2A01 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.57 | 42.0 | 3.66e-01 | 84.0% | 96.4% |
| 1aqtA01 | 2.60.15.10 | Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal | 0.56 | 44.0 | 3.74e-01 | 98.0% | 51.1% |
| 2eo6A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 40.0 | 3.28e-01 | 82.0% | 56.5% |
| 7syvx01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 44.0 | 3.43e-01 | 100.0% | 68.6% |
| 3n6rA03 | 3.30.700.30 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › | 0.55 | 40.0 | 3.10e-01 | 84.0% | 76.7% |
| 1mbmA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 41.0 | 3.78e-01 | 100.0% | 61.1% |
| 5umsA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 40.0 | 3.34e-01 | 84.0% | 78.4% |
| 5dn6I00 | 2.60.15.10 | Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal | 0.54 | 42.0 | 3.75e-01 | 96.0% | 58.7% |
| 7l6yA01 | 2.40.100.10 | Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like | 0.54 | 39.0 | 2.68e-01 | 80.0% | 90.3% |
| 2e5yA01 | 2.60.15.10 | Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal | 0.54 | 41.0 | 3.55e-01 | 96.0% | 50.0% |
| 2hldH01 | 2.60.15.10 | Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal | 0.54 | 41.0 | 3.56e-01 | 96.0% | 52.4% |
| 6tmfJ02 | 3.30.1490.10 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.53 | 45.0 | 4.26e-01 | 100.0% | 82.0% |
| 7lt2A01 | 3.30.460.90 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.53 | 39.0 | 2.61e-01 | 86.0% | 65.7% |
| 3i6uA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 36.0 | 3.15e-01 | 74.0% | 98.9% |
| 7zr3A01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 39.0 | 2.44e-01 | 82.0% | 30.7% |
| 1xv2C01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.53 | 43.0 | 3.49e-01 | 100.0% | 61.3% |
| 1z8gA01 | 3.10.250.10 | Alpha Beta › Roll › Mac-2 Binding Protein › SRCR-like domain | 0.53 | 38.0 | 3.12e-01 | 80.0% | 63.5% |
| 2qf4A02 | 2.40.10.350 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 | 0.53 | 38.0 | 3.32e-01 | 84.0% | 59.3% |
| 2fukA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 42.0 | 2.83e-01 | 94.0% | 46.8% |
| 1st8A01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.52 | 43.0 | 2.72e-01 | 100.0% | 70.3% |
| 5ajqA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 35.0 | 2.97e-01 | 70.0% | 87.2% |
| 1a94A00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.52 | 38.0 | 3.22e-01 | 86.0% | 75.8% |
| 4r3dA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 41.0 | 3.20e-01 | 100.0% | 40.1% |
| 5cvmA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.50 | 39.0 | 2.56e-01 | 100.0% | 48.1% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4119693 | 6064.1.1.0 ↗ | few secondary structure elements › EAGR box containing domain in MG200 › EAGR box containing domain in MG200 › EAGR box containing domain in MG200 | 0.71 | 51.0 | 5.20e-01 | 76.0% | 98.0% |
| 3936469 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 62.0 | 5.14e-01 | 100.0% | 63.3% |
| 3702466 | 220.1.1.80 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › RME-8_N | 0.70 | 53.0 | 4.08e-01 | 84.0% | 64.2% |
| 3597563 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.69 | 52.0 | 3.98e-01 | 84.0% | 62.4% |
| 3250883 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.69 | 53.0 | 4.15e-01 | 84.0% | 74.3% |
| 3903484 | 220.1.1.64 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII | 0.68 | 51.0 | 4.02e-01 | 82.0% | 66.4% |
| 2495545 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.68 | 54.0 | 3.16e-01 | 90.0% | 14.1% |
| 3584224 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.67 | 58.0 | 4.59e-01 | 100.0% | 49.5% |
| 3231154 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 50.0 | 4.36e-01 | 84.0% | 97.5% |
| 3626694 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 55.0 | 4.68e-01 | 100.0% | 61.1% |
| 3408588 | 4.1.1.243 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa | 0.65 | 49.0 | 4.45e-01 | 84.0% | 78.6% |
| 3409587 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.65 | 55.0 | 4.63e-01 | 100.0% | 65.6% |
| 3230520 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.65 | 55.0 | 4.64e-01 | 100.0% | 62.2% |
| 3911241 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.65 | 55.0 | 4.49e-01 | 100.0% | 53.0% |
| 3399412 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.64 | 53.0 | 4.71e-01 | 100.0% | 65.0% |
| 4486451 | 221.1.3.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Sulfite oxidase, middle catalytic domain | 0.64 | 54.0 | 4.31e-01 | 98.0% | 98.1% |
| 3774108 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.64 | 55.0 | 4.54e-01 | 100.0% | 56.8% |
| 3514906 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.64 | 54.0 | 3.72e-01 | 100.0% | 28.9% |
| 4146531 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.64 | 44.0 | 3.99e-01 | 76.0% | 82.7% |
| 3622139 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.64 | 54.0 | 4.53e-01 | 100.0% | 63.3% |
| 3414167 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 52.0 | 3.57e-01 | 100.0% | 26.8% |
| 3663830 | 1.1.8.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C | 0.63 | 52.0 | 4.06e-01 | 96.0% | 79.1% |
| 3393360 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.63 | 53.0 | 4.15e-01 | 100.0% | 47.0% |
| 3980228 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.63 | 52.0 | 4.03e-01 | 100.0% | 48.8% |
| 2994196 | 4.10.1.0 ↗ | beta barrels › SH3 › Fumarylacetoacetate hydrolase, FAH, N-terminal domain › Fumarylacetoacetate hydrolase, FAH, N-terminal domain | 0.63 | 46.0 | 4.25e-01 | 82.0% | 91.3% |
| 3815480 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 52.0 | 4.89e-01 | 100.0% | 83.1% |
| 1694861 | 3363.1.1.0 ↗ | beta sandwiches › avirulence protein AvrPiz-t homologs › avirulence protein AvrPiz-t homologs › avirulence protein AvrPiz-t homologs | 0.62 | 47.0 | 4.20e-01 | 90.0% | 70.9% |
| 3815479 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 49.0 | 4.50e-01 | 98.0% | 93.3% |
| 3622053 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 53.0 | 4.30e-01 | 100.0% | 60.0% |
| 3924213 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.61 | 52.0 | 4.31e-01 | 100.0% | 58.9% |
| 2488620 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.61 | 50.0 | 4.83e-01 | 98.0% | 100.0% |
| 3218835 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 52.0 | 4.15e-01 | 100.0% | 68.5% |
| 3486271 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 51.0 | 4.33e-01 | 100.0% | 63.3% |
| 3389311 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 50.0 | 4.17e-01 | 100.0% | 56.0% |
| 4963592 | 1.1.8.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › PF26503 | 0.61 | 50.0 | 4.57e-01 | 98.0% | 90.0% |
| 3594503 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.61 | 48.0 | 3.77e-01 | 96.0% | 68.8% |
| 3389161 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 50.0 | 4.20e-01 | 100.0% | 61.1% |
| 3213215 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 50.0 | 3.97e-01 | 100.0% | 59.1% |
| 1736348 | 1.1.7.22 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M42 | 0.59 | 49.0 | 4.25e-01 | 98.0% | 98.8% |
| 5058340 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.58 | 49.0 | 4.41e-01 | 96.0% | 72.9% |
| 3495619 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.57 | 41.0 | 3.32e-01 | 82.0% | 62.7% |
| 4275625 | 375.1.1.47 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC | 0.57 | 42.0 | 4.00e-01 | 82.0% | 93.3% |
| 3976843 | 9.11.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC | 0.56 | 42.0 | 3.59e-01 | 84.0% | 89.9% |
| 4568123 | 219.1.1.79 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 | 0.56 | 39.0 | 2.82e-01 | 76.0% | 36.0% |
| 5063794 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.56 | 44.0 | 3.96e-01 | 96.0% | 70.0% |
| 3919870 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.55 | 39.0 | 3.15e-01 | 82.0% | 61.7% |
| 3377025 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.53 | 45.0 | 2.79e-01 | 100.0% | 22.6% |
| 3729698 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.53 | 37.0 | 2.75e-01 | 76.0% | 53.3% |
| 3809821 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.53 | 43.0 | 2.70e-01 | 100.0% | 27.7% |
| 3788044 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.53 | 40.0 | 2.60e-01 | 84.0% | 72.9% |
| 3574901 | 7579.1.1.1 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase | 0.52 | 37.0 | 2.12e-01 | 74.0% | 33.5% |
| 2779726 | 1.1.17.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 | 0.52 | 40.0 | 2.98e-01 | 100.0% | 80.1% |
| 4182536 | 3518.1.1.1 ↗ | a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind | 0.51 | 38.0 | 3.21e-01 | 88.0% | 82.9% |
| 3970136 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.50 | 39.0 | 3.22e-01 | 92.0% | 77.1% |
| 5041036 | 11.1.1.1409 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4129 | 0.50 | 41.0 | 2.98e-01 | 100.0% | 44.4% |
| 2561603 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 40.0 | 3.25e-01 | 92.0% | 68.3% |