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KC847113.1__AGK88024.1__PBP180_009__00009
Bact-VirKC847113.1__AGK88024.1__PBP180_009__00009
Identity
- Accession:
- KC847113 ↗
- Kingdom:
- phage
Quality
83.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 27-76_108-122_349-416
Domain cluster:
rep: MT735630.2__QWS69856.1__X__00031__D76-112_383-442
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3b6hA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.50 | 41.0 | 2.87e-01 | 89.5% | 27.1% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4424174 | 4038.1.1.0 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein | 0.96 | 87.0 | 6.36e-01 | 92.5% | 85.0% |
| 4954546 | 4038.1.1.0 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein | 0.91 | 80.0 | 5.99e-01 | 91.7% | 84.8% |
| 5039294 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.89 | 81.0 | 6.14e-01 | 95.5% | 89.3% |
| 3943006 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.82 | 73.0 | 5.49e-01 | 92.5% | 86.6% |
| 5082483 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.82 | 71.0 | 6.09e-01 | 89.5% | 99.5% |
| 4031453 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.82 | 66.0 | 5.18e-01 | 83.5% | 85.5% |
| 3980619 | 4038.1.1.7 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal_2 | 0.81 | 73.0 | 5.39e-01 | 95.5% | 90.6% |
| 3942126 | 4038.1.1.8 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Abc1-like | 0.81 | 72.0 | 5.35e-01 | 93.2% | 80.0% |
| 4410228 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.81 | 72.0 | 5.56e-01 | 94.0% | 87.6% |
| 3964357 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.81 | 75.0 | 5.74e-01 | 100.0% | 89.3% |
| 3164784 | 4038.1.1.8 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Abc1-like | 0.80 | 70.0 | 5.30e-01 | 93.2% | 78.0% |
| 3944936 | 4038.1.1.8 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Abc1-like | 0.78 | 69.0 | 5.15e-01 | 93.2% | 79.0% |
| 3947685 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.78 | 72.0 | 5.92e-01 | 97.7% | 100.0% |
| None | — | 0.51 | 39.0 | 2.71e-01 | 81.2% | 62.1% | |
| 5068074 | 5073.1.1.11 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Cation_ATPase_C | 0.51 | 43.0 | 3.07e-01 | 94.0% | 74.5% |
| 5020217 | 5073.1.1.11 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Cation_ATPase_C | 0.50 | 43.0 | 3.06e-01 | 96.2% | 54.0% |
D2
medium
residues 141-225
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ijlA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.62 | 39.0 | 3.57e-01 | 92.9% | 49.1% |
| 2lexA00 | 2.20.25.80 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain | 0.61 | 38.0 | 4.35e-01 | 89.4% | 85.7% |
| 3aj3A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.56 | 46.0 | 3.29e-01 | 92.9% | 90.1% |
| 5a8iA00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.55 | 37.0 | 3.39e-01 | 88.2% | 51.7% |
| 1sjdB01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 38.0 | 3.34e-01 | 95.3% | 48.1% |
| 1mkfA02 | 2.60.40.1340 | Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like | 0.54 | 39.0 | 3.11e-01 | 75.3% | 37.8% |
| 1cx8A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.54 | 43.0 | 3.04e-01 | 90.6% | 73.6% |
| 2r2dA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 45.0 | 3.20e-01 | 95.3% | 95.7% |
| 3mnfA00 | 3.40.50.10900 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit | 0.53 | 43.0 | 3.18e-01 | 90.6% | 66.8% |
| 4g79A00 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.52 | 42.0 | 3.71e-01 | 91.8% | 100.0% |
| 8c5yA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 45.0 | 3.67e-01 | 100.0% | 81.8% |
| 1vpbA01 | 3.30.2290.10 | Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily | 0.51 | 36.0 | 2.75e-01 | 76.5% | 79.6% |
| 3qtdA01 | 3.30.2290.10 | Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily | 0.51 | 37.0 | 2.79e-01 | 78.8% | 78.5% |
| 1ya5T01 | 2.20.160.10 | Mainly Beta › Single Sheet › titin filament fold › titin domain like | 0.50 | 35.0 | 3.54e-01 | 71.8% | 90.5% |
| 3zpmA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.50 | 42.0 | 3.30e-01 | 98.8% | 63.0% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4079740 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 1.00 | 98.0 | 8.89e-01 | 100.0% | 81.0% |
| 4954545 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.92 | 66.0 | 6.48e-01 | 100.0% | 70.0% |
| 4951452 | 212.1.1.18 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Lon_C | 0.62 | 42.0 | 3.87e-01 | 70.6% | 91.3% |
| 4972327 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.56 | 41.0 | 4.01e-01 | 77.6% | 73.7% |
| 3592295 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.56 | 48.0 | 3.95e-01 | 96.5% | 86.9% |
| 4951650 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.55 | 42.0 | 3.04e-01 | 83.5% | 57.0% |
| 3739782 | 9.2.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › FBO_C | 0.54 | 35.0 | 2.87e-01 | 72.9% | 35.5% |
| 3956879 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.53 | 48.0 | 3.64e-01 | 100.0% | 77.4% |
| 4117276 | 512.1.1.3 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st, PmbA_TldD_2nd | 0.53 | 38.0 | 2.89e-01 | 77.6% | 78.2% |
| 5035282 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.51 | 36.0 | 3.13e-01 | 71.8% | 56.0% |
| 4979212 | 2011.1.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases | 0.51 | 40.0 | 2.81e-01 | 87.1% | 80.6% |
| 4974429 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.51 | 36.0 | 2.74e-01 | 76.5% | 82.3% |
D3
medium
residues 263-308_320-337
D4
medium
residues 417-473
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6yhrA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 41.0 | 2.85e-01 | 84.2% | 21.9% |
| 3gz5B02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 38.0 | 3.54e-01 | 80.7% | 77.0% |
| 6bekD00 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.50 | 38.0 | 3.48e-01 | 91.2% | 97.8% |