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KC900378.1__AGR46363.1__LKA5_010.2__00011

Bact-Vir

KC900378.1__AGR46363.1__LKA5_010.2__00011

Identity

Accession:
KC900378 ↗
Kingdom:
phage

Quality

90.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Hollowayvirus› Pseudomonas_phage_LKA5

TaxID: 1327940

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-70
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.65 39.0 3.73e-01 95.7% 52.5%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.62 42.0 4.54e-01 94.2% 87.3%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.62 33.0 3.04e-01 76.8% 40.4%
4jdmA02 6.10.250.2680 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 29.0 3.01e-01 78.3% 44.4%
3qr8A01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.56 40.0 3.81e-01 76.8% 78.6%
2qcuB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 39.0 2.74e-01 73.9% 62.9%
3cjlA00 3.10.20.850 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 0.54 31.0 2.91e-01 95.7% 44.3%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.54 39.0 3.96e-01 79.7% 100.0%
3go5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 41.0 3.96e-01 87.0% 86.1%
3zqmA00 6.10.140.2160 Special › Helix non-globular › Helix Hairpins › 0.51 27.0 2.96e-01 95.7% 61.0%
6lbtA01 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 38.0 3.08e-01 82.6% 81.7%
3ffyA00 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.50 38.0 3.24e-01 81.2% 87.5%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 44.0 3.47e-01 100.0% 48.0%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 44.0 4.01e-01 100.0% 85.4%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3662203 377.1.2.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.77 55.0 5.14e-01 91.3% 61.2%
3461511 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.74 51.0 4.10e-01 92.8% 38.5%
3351761 377.1.2.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.73 54.0 4.79e-01 92.8% 55.8%
4028826 377.1.2.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger 0.72 55.0 4.51e-01 91.3% 45.8%
3993483 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.66 55.0 4.82e-01 92.8% 69.5%
3913070 331.4.1.3 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › AdenylateSensor 0.65 32.0 2.98e-01 73.9% 38.6%
3913071 220.1.1.52 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.64 47.0 3.80e-01 79.7% 77.9%
2035461 3380.1.1.1 ↗ a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Lsr2 0.63 42.0 4.59e-01 94.2% 85.7%
3926106 376.1.3.11 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-HC5HC2H_2 0.62 44.0 3.55e-01 75.4% 80.7%
5044484 2.1.1.17 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.59 41.0 3.76e-01 73.9% 77.4%
4949606 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.58 43.0 2.97e-01 81.2% 63.1%
4950861 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.56 47.0 3.65e-01 95.7% 49.0%
3605949 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.52 37.0 2.54e-01 75.4% 78.5%
357202 896.1.1.2 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 0.52 38.0 3.63e-01 79.7% 98.8%
4971686 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.51 44.0 3.92e-01 100.0% 78.1%
4647653 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.51 44.0 2.76e-01 100.0% 69.2%
4012512 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 43.0 2.78e-01 100.0% 61.1%
4943694 242.3.1.3 ↗ a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_II 0.51 39.0 3.33e-01 97.1% 51.8%
1681363 3398.1.1.1 ↗ a/b three-layered sandwiches › STING C-terminal domain › STING C-terminal domain › STING C-terminal domain › TMEM173 0.51 41.0 3.05e-01 91.3% 76.5%
5060792 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.50 44.0 3.66e-01 100.0% 69.4%