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KC959568.1__AGN89432.1__X__00048

Bact-Vir

KC959568.1__AGN89432.1__X__00048

Identity

Accession:
KC959568 ↗
Kingdom:
phage

Quality

84.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 32-87
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hq0A00 3.60.100.10 Alpha Beta › 4-Layer Sandwich › Cytotoxic necrotizing factor 1 (CNF1) › Cytotoxic necrotizing factor, Rho-activating domain 0.74 54.0 3.40e-01 100.0% 14.9%
3cqnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.72 51.0 3.69e-01 94.6% 26.1%
1ayrB02 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 59.0 4.15e-01 100.0% 67.2%
3zyvC06 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.66 59.0 3.75e-01 100.0% 21.8%
5tseA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.65 52.0 3.86e-01 100.0% 35.3%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.65 50.0 3.74e-01 100.0% 31.6%
4rljB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.65 54.0 4.13e-01 100.0% 80.3%
4lwoB02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.63 53.0 3.76e-01 96.4% 58.2%
3r0qA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.63 56.0 3.76e-01 100.0% 47.6%
2l6mA00 3.30.160.400 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 48.0 3.94e-01 100.0% 46.5%
1atiB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.62 52.0 3.35e-01 100.0% 51.1%
2pmqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 47.0 3.66e-01 100.0% 37.2%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.61 44.0 3.22e-01 100.0% 25.3%
1zhxA03 2.40.160.120 Mainly Beta › Beta Barrel › Porin › 0.61 45.0 3.18e-01 100.0% 24.1%
3sjnA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 41.0 3.20e-01 96.4% 33.6%
1dpgA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 40.0 2.52e-01 100.0% 12.9%
3n4fA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 45.0 3.52e-01 96.4% 37.8%
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.58 48.0 3.79e-01 100.0% 44.5%
1xo8A00 2.60.40.1820 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 41.0 3.20e-01 80.4% 31.8%
1g6q102 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.58 47.0 3.35e-01 94.6% 66.3%
3n0aA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 49.0 3.72e-01 96.4% 54.1%
4ibnA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 42.0 3.02e-01 100.0% 24.5%
2pk0A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.57 51.0 3.31e-01 100.0% 36.8%
1nbuA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.57 50.0 3.92e-01 100.0% 82.2%
2r76A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.57 44.0 3.41e-01 100.0% 37.1%
6etzA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 44.0 3.04e-01 87.5% 42.9%
1yq2A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 50.0 3.93e-01 100.0% 67.0%
1dhnA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.56 49.0 3.86e-01 100.0% 81.8%
7jtjA01 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.56 47.0 3.15e-01 100.0% 23.9%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 38.0 3.67e-01 98.2% 63.5%
7z2bK01 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.55 49.0 3.06e-01 100.0% 32.0%
1pfoA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.54 39.0 4.02e-01 98.2% 81.1%
5ek8A01 2.60.40.3330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 44.0 3.47e-01 94.6% 57.9%
4l1nA00 2.40.128.660 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 0.53 33.0 2.41e-01 94.6% 21.1%
7alkA01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 45.0 3.35e-01 100.0% 55.6%
5b3pA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.53 40.0 3.03e-01 96.4% 33.6%
2cg8C01 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.53 42.0 3.51e-01 98.2% 81.5%
3w1eA02 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.53 44.0 3.21e-01 100.0% 34.5%
4n4rB00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.53 43.0 3.31e-01 100.0% 41.1%
2ch9A01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 45.0 3.67e-01 100.0% 54.0%
3bjsA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 39.0 3.19e-01 100.0% 40.2%
4n6mB00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 45.0 3.63e-01 100.0% 55.2%
3pu9A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 47.0 3.05e-01 100.0% 33.2%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.52 41.0 3.23e-01 100.0% 40.6%
4jhmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 40.0 3.24e-01 100.0% 41.9%
8ainB01 3.10.450.250 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor 0.51 38.0 3.15e-01 96.4% 43.8%
3weoA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 41.0 3.13e-01 100.0% 38.6%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 44.0 3.55e-01 96.4% 71.4%
6hswA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 35.0 2.20e-01 96.4% 10.7%
3kenA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.50 44.0 2.74e-01 100.0% 33.6%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3228089 5087.1.1.0 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 0.74 45.0 3.22e-01 100.0% 21.9%
5078865 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.69 57.0 4.36e-01 100.0% 39.3%
3332191 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 57.0 4.10e-01 100.0% 32.4%
3667413 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 48.0 4.40e-01 100.0% 57.3%
3579353 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.67 56.0 4.40e-01 98.2% 44.2%
4036210 220.1.1.36 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.65 53.0 3.66e-01 100.0% 25.4%
3936898 11.1.1.41 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.64 55.0 3.92e-01 100.0% 31.4%
3783089 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.63 47.0 3.70e-01 100.0% 37.5%
4284384 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.62 42.0 3.31e-01 85.7% 32.0%
4020277 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 54.0 3.75e-01 100.0% 72.3%
3888975 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 51.0 3.51e-01 100.0% 26.7%
3593432 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 52.0 3.64e-01 100.0% 32.0%
3433806 5.1.2.29 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF1668 0.61 52.0 3.51e-01 100.0% 25.8%
3787225 4051.1.1.1 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.60 49.0 3.54e-01 100.0% 35.9%
2724175 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.60 49.0 3.33e-01 100.0% 31.0%
3837731 5084.1.1.3 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › MSP 0.60 45.0 3.61e-01 92.9% 39.8%
3193823 7502.1.1.2 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix 0.59 51.0 3.34e-01 100.0% 26.2%
4334767 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.59 47.0 4.00e-01 100.0% 52.6%
4025866 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 47.0 3.02e-01 98.2% 16.2%
3788996 7502.1.1.2 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix 0.59 50.0 3.32e-01 100.0% 22.5%
3733008 2484.1.1.114 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.59 45.0 2.86e-01 92.9% 15.3%
3697945 4.1.1.312 beta barrels › SH3 › SH3 › SH3 › Med13_N 0.58 45.0 3.18e-01 96.4% 24.9%
4823574 4030.1.1.1 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › F_actin_cap_B 0.58 47.0 3.60e-01 100.0% 41.0%
3481274 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 48.0 3.87e-01 100.0% 46.8%
3192002 11.1.1.41 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.58 46.0 3.35e-01 100.0% 69.0%
3880484 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.57 50.0 4.00e-01 98.2% 53.6%
4929184 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 40.0 2.99e-01 96.4% 27.7%
5039727 2484.1.1.66 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.56 49.0 3.36e-01 100.0% 29.9%
3503045 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.56 46.0 3.59e-01 100.0% 40.0%
3190012 883.1.1.12 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › DUF5923 0.56 49.0 3.28e-01 100.0% 36.9%
3230538 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.56 48.0 3.38e-01 100.0% 50.5%
3850354 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.56 44.0 3.61e-01 100.0% 50.0%
3927132 221.13.1.0 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.55 42.0 3.47e-01 98.2% 42.6%
4022650 9.3.1.0 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.55 48.0 3.27e-01 100.0% 37.1%
3929435 11.1.4.7 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › TTR-52 0.55 48.0 3.86e-01 100.0% 63.6%
3484305 922.1.1.0 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.54 40.0 3.91e-01 92.9% 70.8%
3359931 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 3.68e-01 98.2% 64.2%
3704401 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 41.0 3.34e-01 98.2% 41.7%
3341014 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 49.0 4.09e-01 100.0% 94.6%
3301111 331.3.1.25 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PaO 0.54 39.0 3.05e-01 100.0% 33.3%
4958244 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.12e-01 82.1% 59.2%
3247406 3333.1.1.1 a+b two layers › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 › DHR-2_Lobe_B 0.53 43.0 3.21e-01 96.4% 39.4%
4438042 11.1.1.365 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP1_ZP4_Ig-like 0.53 43.0 3.47e-01 100.0% 74.6%
3597001 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 43.0 3.21e-01 100.0% 31.4%
3828275 219.1.1.71 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PDDEXK_6 0.53 42.0 3.13e-01 98.2% 68.3%
3709649 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.53 39.0 3.09e-01 100.0% 36.2%
3357183 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.52 41.0 2.97e-01 94.6% 30.0%
3599731 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 43.0 3.09e-01 96.4% 41.3%
5037168 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.52 38.0 3.06e-01 100.0% 36.8%
3913372 5.1.4.242 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N 0.52 42.0 2.73e-01 100.0% 25.4%
3267956 11.1.1.1311 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28708 0.52 45.0 3.57e-01 100.0% 60.8%
4016487 11.1.1.203 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LacZ_4 0.51 42.0 3.82e-01 100.0% 65.9%
4017256 10.32.1.33 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CIA30 0.51 44.0 2.98e-01 100.0% 73.3%
3733936 11.8.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.51 38.0 2.74e-01 96.4% 26.1%
3703275 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 43.0 3.44e-01 96.4% 61.7%
4016731 59.1.3.1 beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains › RNA_pol_I_A49 0.50 37.0 3.05e-01 96.4% 38.3%
3907282 11.1.1.297 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Integrin_A_Ig_2 0.50 38.0 2.89e-01 83.9% 61.4%
3637448 220.1.1.9 beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs 0.50 41.0 3.02e-01 100.0% 36.1%