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KC960489.1__AHB79222.1__MaF1660_ph0027__00027

Bact-Vir

KC960489.1__AHB79222.1__MaF1660_ph0027__00027

Identity

Accession:
KC960489 ↗
Kingdom:
phage

Quality

85.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-143
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14011.12 best ESX-1_EspG 52.4 7.90e-14 97.0% 49.8%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2n54B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 25.0 3.62e-01 87.8% 66.7%
2jpiA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.65 30.0 3.46e-01 85.5% 59.4%
2oezA01 2.60.440.10 Mainly Beta › Sandwich › YacF-like › YacF-like domains 0.61 23.0 2.93e-01 93.1% 56.4%
2dmwA01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.59 35.0 3.75e-01 99.2% 66.4%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.57 39.0 4.15e-01 99.2% 78.9%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.57 41.0 3.96e-01 83.2% 65.1%
4p6zM01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 36.0 3.72e-01 100.0% 68.6%
1cqaA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.56 42.0 4.31e-01 99.2% 82.1%
1yprA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.56 41.0 4.24e-01 100.0% 80.8%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.55 36.0 3.73e-01 99.2% 68.0%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.55 31.0 3.02e-01 72.5% 50.0%
2acaA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.54 39.0 3.57e-01 96.9% 55.7%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.54 30.0 3.47e-01 84.7% 76.7%
1skoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.53 36.0 3.86e-01 99.2% 78.4%
3imhA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 38.0 2.79e-01 72.5% 40.4%
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.52 35.0 3.31e-01 93.9% 54.2%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 31.0 3.22e-01 80.2% 62.2%
2ywqA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.52 34.0 3.94e-01 84.0% 97.7%
4orlA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 3.96e-01 73.3% 87.3%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 24.0 3.35e-01 81.7% 95.1%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1390013 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.88 84.0 6.24e-01 100.0% 51.9%
3955040 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.88 84.0 6.36e-01 100.0% 69.8%
3287652 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.86 83.0 6.29e-01 100.0% 70.7%
4427696 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.84 80.0 6.18e-01 100.0% 68.2%
3287961 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.83 79.0 6.09e-01 100.0% 71.5%
3283450 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.82 78.0 6.05e-01 100.0% 70.0%
3283829 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.73 69.0 5.57e-01 100.0% 73.5%
3233005 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.69 33.0 2.65e-01 83.2% 23.5%
5063295 331.16.1.1 a+b two layers › TBP-like › TA0095-like › TA0095-like › DUF5611 0.65 37.0 4.19e-01 86.3% 74.0%
4941285 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.63 27.0 3.73e-01 84.0% 77.1%
4944880 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 39.0 4.13e-01 96.9% 69.2%
3324335 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.62 46.0 4.21e-01 100.0% 59.4%
5045959 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 38.0 4.18e-01 99.2% 75.5%
5074455 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 39.0 4.21e-01 99.2% 76.4%
4978622 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 37.0 4.18e-01 99.2% 80.0%
4945712 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 39.0 3.98e-01 99.2% 68.8%
4108772 243.3.1.10 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YPEB_PepSY1-2 0.59 32.0 4.08e-01 81.7% 92.0%
3783266 223.2.1.33 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.59 40.0 4.17e-01 96.2% 73.6%
5044629 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 37.0 3.99e-01 99.2% 73.9%
5072591 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 37.0 4.01e-01 99.2% 75.7%
3817626 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.57 44.0 3.99e-01 99.2% 59.4%
5051142 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 38.0 3.69e-01 100.0% 61.4%
4996048 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 38.0 3.83e-01 99.2% 68.5%
5076068 223.2.1.3 a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.56 37.0 4.11e-01 100.0% 82.9%
3209295 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.56 44.0 4.45e-01 100.0% 82.2%
3461881 223.2.1.15 a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.55 37.0 3.80e-01 99.2% 70.4%
5051015 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 37.0 3.55e-01 99.2% 58.1%
5049349 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 38.0 3.62e-01 100.0% 60.0%
5000881 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 39.0 3.70e-01 100.0% 61.9%
2755883 331.19.1.1 a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin 0.54 30.0 3.48e-01 84.7% 75.0%
5077363 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 37.0 3.75e-01 99.2% 70.0%
3537449 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.54 40.0 4.10e-01 100.0% 79.1%
4034521 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.54 33.0 3.78e-01 88.5% 81.0%
3226791 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.54 39.0 4.06e-01 100.0% 80.0%
3418904 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.52 30.0 3.38e-01 93.9% 74.0%
4945232 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 35.0 3.69e-01 99.2% 75.8%
3620870 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 35.0 3.93e-01 71.8% 91.0%
3567966 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.51 33.0 3.79e-01 80.2% 89.5%
3255034 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 34.0 3.40e-01 84.0% 65.2%
3593728 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 44.0 4.20e-01 100.0% 82.7%
D2 high residues 145-268
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14011.12 best ESX-1_EspG 33.6 4.40e-08 93.5% 45.7%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.59 33.0 3.92e-01 78.2% 78.7%
3lidA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 35.0 3.89e-01 79.8% 82.3%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 31.0 3.27e-01 73.4% 61.5%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.53 30.0 3.23e-01 79.8% 63.9%
1nrjA00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 40.0 3.83e-01 91.9% 69.4%
3v39A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 44.0 3.67e-01 97.6% 96.7%
2veaA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 37.0 3.68e-01 84.7% 71.5%
4ewfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 43.0 3.42e-01 94.4% 91.4%
4hesA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 43.0 3.40e-01 95.2% 87.3%
4gw9A02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 36.0 4.04e-01 79.0% 98.9%
1tp6A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 34.0 3.44e-01 80.6% 67.5%
6xrbA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.50 42.0 4.06e-01 94.4% 79.1%
2va0A00 3.30.450.160 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 38.0 4.26e-01 83.9% 99.0%
2acaA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.50 38.0 3.44e-01 87.9% 56.9%
1mpgA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.50 28.0 2.93e-01 78.2% 58.9%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1390013 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.84 78.0 5.79e-01 100.0% 44.1%
3955040 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.81 77.0 5.77e-01 100.0% 46.5%
3960510 3844.2.1.0 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone 0.81 76.0 5.73e-01 100.0% 45.0%
3283450 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.79 74.0 5.68e-01 100.0% 48.5%
3287961 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.77 72.0 5.53e-01 100.0% 47.9%
3287652 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.77 71.0 5.45e-01 100.0% 45.6%
1688233 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.75 70.0 5.39e-01 100.0% 47.9%
4948381 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.71 40.0 4.66e-01 83.1% 76.7%
4996248 331.19.1.0 a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains 0.68 38.0 4.41e-01 81.5% 75.6%
4976589 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.66 37.0 4.20e-01 83.1% 71.6%
4982133 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.66 26.0 3.25e-01 83.1% 56.2%
3288524 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.64 56.0 4.49e-01 92.7% 82.6%
3820521 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.64 32.0 2.34e-01 80.6% 19.7%
3169357 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.61 38.0 4.01e-01 80.6% 70.0%
3277617 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 35.0 3.74e-01 82.3% 70.5%
3714469 2002.1.1.45 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_31_2nd 0.56 47.0 3.03e-01 91.1% 83.7%
3702063 331.9.1.5 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP4E_app_platf 0.56 36.0 3.82e-01 87.1% 72.5%
4953412 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.56 40.0 4.04e-01 92.7% 72.8%
3950370 881.4.1.3 a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4245 0.56 39.0 3.67e-01 92.7% 58.1%
4943675 12.3.1.73 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_31_2nd 0.56 43.0 3.53e-01 81.5% 85.8%
3955906 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.55 31.0 3.70e-01 79.0% 81.2%
3909780 868.1.1.1 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.55 40.0 3.48e-01 89.5% 48.0%
3214387 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 32.0 3.59e-01 75.8% 75.6%
5055513 220.5.1.1 beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.55 34.0 3.45e-01 77.4% 62.5%
3902810 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.55 35.0 3.55e-01 71.8% 63.2%
4632674 223.1.1.171 a+b three layers › Profilin-like › sensor domains › sensor domains › Cache_3-Cache_2 0.54 33.0 3.42e-01 82.3% 64.3%
3822070 331.10.2.8 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › SAM_decarbox 0.53 35.0 3.67e-01 82.3% 72.2%
4964119 300.1.1.18 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FilR1_middle 0.53 45.0 4.10e-01 90.3% 87.5%
3711119 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.52 36.0 3.72e-01 87.1% 74.8%
4030120 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 2.68e-01 92.7% 20.6%
5035423 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 28.0 3.28e-01 89.5% 75.3%
4033840 868.1.1.1 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.51 41.0 3.63e-01 91.9% 56.8%
4966080 300.1.1.18 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FilR1_middle 0.51 43.0 3.99e-01 89.5% 91.0%
3957516 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.51 26.0 2.96e-01 85.5% 63.3%
3846916 331.9.1.8 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP3B1_C_2 0.51 33.0 3.46e-01 83.9% 69.6%
4964699 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.51 39.0 4.27e-01 92.7% 100.0%
4974776 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.50 39.0 3.75e-01 91.1% 70.3%
3718188 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.50 35.0 3.58e-01 79.0% 74.2%
4945424 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 36.0 3.57e-01 89.5% 70.8%