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KC960489.1__AHB79251.1__MaF1660_ph0056__00056
Bact-VirKC960489.1__AHB79251.1__MaF1660_ph0056__00056
Identity
- Accession:
- KC960489 ↗
- Kingdom:
- phage
Quality
80.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 34-109
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2p9mB00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.68 | 37.0 | 3.08e-01 | 89.5% | 31.0% |
| 2dt5B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 51.0 | 5.25e-01 | 100.0% | 94.5% |
| 4r60A01 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.62 | 44.0 | 3.50e-01 | 97.4% | 35.2% |
| 3cuqC01 | 1.10.10.570 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › """Winged helix"" DNA-binding domain. Chain C. Domain 1" | 0.62 | 51.0 | 4.73e-01 | 90.8% | 78.6% |
| 3cuqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 48.0 | 4.78e-01 | 90.8% | 100.0% |
| 1wj5A01 | 1.10.10.980 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain | 0.55 | 47.0 | 4.33e-01 | 94.7% | 98.0% |
| 2kloA00 | 1.10.10.1420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA replication factor Cdt1, C-terminal WH domain | 0.55 | 47.0 | 3.97e-01 | 100.0% | 60.1% |
| 3bwgB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 44.0 | 4.56e-01 | 86.8% | 97.1% |
| 1chmA01 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.54 | 48.0 | 3.77e-01 | 97.4% | 48.4% |
| 6oinA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 43.0 | 4.53e-01 | 100.0% | 100.0% |
| 5xyjA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.54 | 38.0 | 3.04e-01 | 86.8% | 36.3% |
| 2d4aA02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.53 | 37.0 | 2.99e-01 | 72.4% | 73.1% |
| 3dv8A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 46.0 | 4.64e-01 | 97.4% | 94.9% |
| 3keyA02 | 3.30.1370.230 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain | 0.53 | 44.0 | 4.18e-01 | 90.8% | 92.0% |
| 1xfjA00 | 3.60.140.10 | Alpha Beta › 4-Layer Sandwich › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases | 0.52 | 40.0 | 2.83e-01 | 85.5% | 53.1% |
| 3lfkD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 43.0 | 3.94e-01 | 100.0% | 86.4% |
| 2fwrA01 | 3.40.1170.30 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › | 0.51 | 28.0 | 3.17e-01 | 82.9% | 68.4% |
| 1ulqA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.50 | 36.0 | 2.83e-01 | 86.8% | 33.1% |
| 4oxiA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.50 | 44.0 | 2.77e-01 | 97.4% | 50.2% |
| 4y4mC00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 40.0 | 2.84e-01 | 100.0% | 26.7% |
| 2gviA02 | 3.30.1330.20 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain | 0.50 | 35.0 | 3.27e-01 | 77.6% | 56.7% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5078975 | 3745.1.1.1 ↗ | alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex | 0.64 | 57.0 | 3.66e-01 | 100.0% | 65.3% |
| 5056454 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.60 | 42.0 | 3.80e-01 | 78.9% | 52.4% |
| 3223788 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.60 | 51.0 | 4.40e-01 | 97.4% | 86.4% |
| 4013299 | 109.4.1.1304 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_10, TPR_12 | 0.58 | 40.0 | 2.41e-01 | 86.8% | 10.8% |
| 5079223 | 183.1.1.1 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Fe_dep_repr_C | 0.58 | 50.0 | 4.11e-01 | 98.7% | 53.1% |
| 5057344 | 4044.1.1.0 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins | 0.58 | 40.0 | 3.93e-01 | 100.0% | 65.9% |
| 4415569 | 4055.1.1.1 ↗ | a+b complex topology › a+b domain in virulence-associated V antigen › a+b domain in virulence-associated V antigen › a+b domain in virulence-associated V antigen › LcrV | 0.58 | 49.0 | 4.10e-01 | 100.0% | 84.1% |
| 2704 | 101.1.2.107 ↗ | alpha arrays › HTH › HTH › winged helix domain › STN1_2 | 0.57 | 46.0 | 4.02e-01 | 90.8% | 79.2% |
| 3390936 | 101.1.2.267 ↗ | alpha arrays › HTH › HTH › winged helix domain › Nse4_C | 0.56 | 48.0 | 4.41e-01 | 96.1% | 74.0% |
| 3488760 | 3937.1.1.0 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 | 0.56 | 42.0 | 2.79e-01 | 80.3% | 60.0% |
| 3167635 | 101.1.2.267 ↗ | alpha arrays › HTH › HTH › winged helix domain › Nse4_C | 0.55 | 46.0 | 4.04e-01 | 94.7% | 65.8% |
| 4992875 | 101.1.2.279 ↗ | alpha arrays › HTH › HTH › winged helix domain › AbiEi_4 | 0.55 | 45.0 | 4.61e-01 | 98.7% | 94.7% |
| 3809617 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.55 | 42.0 | 2.91e-01 | 82.9% | 26.5% |
| 4008836 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.54 | 32.0 | 3.12e-01 | 98.7% | 50.6% |
| 4947718 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.54 | 43.0 | 3.59e-01 | 89.5% | 50.0% |
| 3373297 | 328.7.1.0 ↗ | a+b two layers › IF3-like › Smr domain › Smr domain | 0.54 | 41.0 | 2.59e-01 | 84.2% | 29.8% |
| 4442936 | 2484.3.1.5 ↗ | mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › PepQ_N | 0.54 | 46.0 | 3.69e-01 | 98.7% | 47.1% |
| 1175670 | 101.1.2.142 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 | 0.53 | 46.0 | 4.60e-01 | 97.4% | 92.5% |
| 3228170 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.53 | 46.0 | 3.81e-01 | 100.0% | 77.2% |
| 3676416 | 320.4.1.3 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB | 0.53 | 46.0 | 4.04e-01 | 100.0% | 70.0% |
| 4974744 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.52 | 44.0 | 3.44e-01 | 97.4% | 44.0% |
| 4626680 | 101.1.2.170 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_51 | 0.52 | 44.0 | 4.01e-01 | 100.0% | 70.9% |
| 3483829 | 2484.3.1.6 ↗ | mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › DAAF9_N | 0.52 | 45.0 | 3.30e-01 | 97.4% | 47.6% |
| 3663972 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.52 | 41.0 | 2.89e-01 | 85.5% | 42.1% |
| 3957035 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.52 | 42.0 | 2.96e-01 | 89.5% | 34.8% |
| 4602033 | 304.111.1.0 ↗ | a+b two layers › Alpha-beta plaits › PurM C-terminal domain-like › PurM C-terminal domain-like | 0.52 | 37.0 | 2.97e-01 | 77.6% | 59.4% |
| 3404984 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.51 | 44.0 | 2.75e-01 | 100.0% | 23.4% |
| 4289471 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.50 | 42.0 | 2.72e-01 | 92.1% | 43.1% |