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KC960489.1__AHB79294.1__MaF1660_ph0100__00099

Bact-Vir

KC960489.1__AHB79294.1__MaF1660_ph0100__00099

Identity

Accession:
KC960489 ↗
Kingdom:
phage

Quality

88.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 40-98
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ybxA00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.87 80.0 6.83e-01 100.0% 65.9%
1j8bA00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.82 73.0 6.28e-01 100.0% 64.1%
3f42A00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.81 72.0 6.21e-01 100.0% 63.4%
5jeaC00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.74 66.0 4.12e-01 100.0% 27.7%
1vzyA01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.71 51.0 3.36e-01 76.3% 96.2%
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.63 52.0 3.91e-01 98.3% 50.3%
4z9mB02 3.30.590.10 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain 0.60 53.0 3.71e-01 100.0% 57.1%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 52.0 3.99e-01 100.0% 87.9%
2oqhA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 52.0 4.21e-01 100.0% 86.8%
2ch5A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 52.0 3.90e-01 98.3% 95.1%
1z6nA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 40.0 2.98e-01 74.6% 31.9%
1eh7A01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.57 39.0 3.70e-01 93.2% 60.0%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 48.0 3.98e-01 94.9% 94.2%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.55 45.0 3.42e-01 89.8% 78.0%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 46.0 3.76e-01 94.9% 64.9%
3cxbB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.63e-01 89.8% 100.0%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 41.0 3.62e-01 86.4% 72.8%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.53 44.0 3.64e-01 94.9% 98.2%
1btkA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.21e-01 91.5% 76.9%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 3.60e-01 93.2% 66.7%
2f9wA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 43.0 3.42e-01 96.6% 100.0%
3gv1A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 39.0 3.01e-01 83.1% 74.1%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3291668 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.92 86.0 7.32e-01 100.0% 65.6%
3957660 245.2.1.2 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › DUF2710 0.91 84.0 7.20e-01 100.0% 66.7%
3291629 245.2.1.0 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB 0.90 84.0 6.76e-01 100.0% 56.2%
3956336 245.2.1.0 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB 0.90 84.0 6.45e-01 100.0% 49.2%
3279757 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.90 83.0 7.25e-01 100.0% 69.4%
3288416 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.90 83.0 6.71e-01 100.0% 57.1%
3283626 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.90 81.0 7.80e-01 100.0% 87.7%
4285664 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.90 82.0 6.59e-01 100.0% 55.2%
4168230 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.89 82.0 6.85e-01 100.0% 63.2%
4637448 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.89 83.0 6.88e-01 100.0% 63.2%
4043859 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.89 81.0 6.71e-01 100.0% 61.0%
3959062 245.2.1.0 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB 0.88 81.0 7.09e-01 100.0% 69.4%
3952797 245.2.1.3 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › DUF2694 0.88 82.0 7.13e-01 100.0% 69.4%
4213489 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.88 81.0 6.80e-01 100.0% 63.2%
3278284 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.88 81.0 6.66e-01 100.0% 59.0%
4454311 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.88 81.0 6.65e-01 100.0% 65.0%
3289657 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.87 81.0 7.04e-01 100.0% 69.4%
4143468 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.87 79.0 6.75e-01 100.0% 64.4%
3949799 245.2.1.0 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB 0.87 78.0 7.31e-01 100.0% 81.4%
4236240 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.87 78.0 6.56e-01 100.0% 61.1%
3290578 245.2.1.0 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB 0.87 79.0 6.55e-01 100.0% 60.0%
4343474 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.87 80.0 6.69e-01 100.0% 63.2%
3359168 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.87 79.0 6.53e-01 100.0% 59.0%
4068261 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.86 80.0 7.71e-01 100.0% 92.3%
4047302 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.86 78.0 6.46e-01 100.0% 59.0%
4197141 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.86 78.0 6.44e-01 100.0% 59.0%
4102395 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.85 78.0 7.53e-01 100.0% 92.3%
4139864 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.85 78.0 6.48e-01 100.0% 61.2%
3284530 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.85 78.0 6.54e-01 100.0% 63.2%
4067487 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.85 76.0 6.48e-01 100.0% 63.2%
4194016 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.84 76.0 7.42e-01 100.0% 92.3%
3288794 245.2.1.0 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB 0.84 76.0 6.41e-01 100.0% 62.1%
3604752 245.2.1.0 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB 0.83 75.0 5.54e-01 100.0% 40.7%
4337520 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.83 74.0 6.16e-01 100.0% 58.0%
3594569 245.2.1.0 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB 0.83 74.0 7.04e-01 100.0% 84.3%
4567436 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.83 75.0 6.61e-01 100.0% 70.6%
3283205 245.2.1.0 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB 0.83 72.0 6.84e-01 100.0% 81.4%
3703118 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.83 74.0 6.18e-01 100.0% 59.0%
4509956 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.83 74.0 7.22e-01 100.0% 90.8%
3960596 245.2.1.0 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB 0.82 74.0 6.53e-01 100.0% 70.6%
3589881 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.82 74.0 6.26e-01 100.0% 63.2%
4124819 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.82 74.0 6.52e-01 100.0% 72.9%
4391637 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.82 72.0 6.24e-01 100.0% 64.4%
3962103 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.82 72.0 5.97e-01 100.0% 56.2%
4096246 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.81 73.0 7.07e-01 100.0% 92.3%
4145290 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.81 72.0 6.16e-01 100.0% 63.2%
4472467 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.80 71.0 6.29e-01 100.0% 70.6%
4498285 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.79 70.0 6.00e-01 100.0% 63.2%
3952816 245.2.1.2 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › DUF2710 0.79 69.0 6.69e-01 100.0% 87.7%
4067567 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.79 71.0 6.02e-01 100.0% 62.1%
4527834 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.79 71.0 6.89e-01 100.0% 90.8%
4504596 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.79 69.0 6.01e-01 100.0% 65.6%
3286927 245.2.1.0 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB 0.78 69.0 6.31e-01 100.0% 74.7%
3291451 245.2.1.0 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB 0.76 66.0 5.72e-01 100.0% 63.2%
3604879 245.2.1.0 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB 0.75 67.0 4.50e-01 100.0% 28.4%
4931021 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.70 55.0 4.15e-01 93.2% 36.4%
5046627 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.69 58.0 4.64e-01 100.0% 45.6%
3969059 213.1.1.31 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 0.67 56.0 4.34e-01 100.0% 41.5%
3274854 213.1.1.27 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.66 52.0 3.76e-01 94.9% 28.8%
4173456 2484.1.1.211 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB 0.66 58.0 3.95e-01 96.6% 97.9%
3668711 109.4.1.916 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_COPA_B 0.64 34.0 2.11e-01 88.1% 8.8%
3569527 213.1.1.16 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.63 54.0 3.94e-01 100.0% 34.5%
3273434 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.63 54.0 4.26e-01 100.0% 60.8%
4977522 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.63 52.0 3.85e-01 93.2% 35.5%
4875810 321.1.1.3 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › ATP-gua_Ptrans 0.60 52.0 3.90e-01 96.6% 42.2%
3789602 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 50.0 3.89e-01 93.2% 64.0%
3695131 708.1.2.6 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA 0.58 48.0 4.03e-01 94.9% 95.2%
4426175 3604.1.1.1 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.57 43.0 4.16e-01 88.1% 80.0%
3792816 220.1.1.33 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.57 47.0 3.80e-01 93.2% 85.0%
3295440 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 44.0 3.25e-01 86.4% 68.5%
5014656 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.56 47.0 4.64e-01 94.9% 95.4%
3912099 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 47.0 3.88e-01 91.5% 91.4%
3596148 5069.1.1.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.55 49.0 3.59e-01 100.0% 56.8%
3725577 708.1.2.6 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA 0.55 47.0 3.59e-01 96.6% 80.7%
3200541 708.1.2.6 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA 0.55 47.0 3.50e-01 100.0% 81.8%
3736867 708.1.2.6 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA 0.54 46.0 3.50e-01 96.6% 77.2%
3701792 2484.1.1.266 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27040 0.53 46.0 3.22e-01 98.3% 88.5%
4956705 3407.1.1.2 mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop5_56-rel_N_Arc 0.52 43.0 3.35e-01 89.8% 68.8%
3521829 4.1.1.284 beta barrels › SH3 › SH3 › SH3 › SBNO 0.51 36.0 2.97e-01 76.3% 80.0%
3241191 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 42.0 3.45e-01 94.9% 94.8%
3258360 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 39.0 3.26e-01 84.7% 81.9%
3943226 2484.2.1.1 mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain › Methyltransf_1N 0.50 41.0 3.60e-01 88.1% 69.4%