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KF021268.1__AGR48268.1__SEP1_141__00140

Bact-Vir

KF021268.1__AGR48268.1__SEP1_141__00140

Identity

Accession:
KF021268 ↗
Kingdom:
phage

Quality

83.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Sepunavirus› Staphylococcus_phage_phiIBB-SEP1

TaxID: 1340769

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 35-106
PDB
Domain cluster: rep: OP756059.1__UZO33122.1__CBSLWZGG_CDS168__00169__D10-71
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.85 71.0 6.13e-01 98.6% 60.4%
1kmdA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 34.0 2.96e-01 83.3% 33.3%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 33.0 2.98e-01 93.1% 38.7%
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.54 38.0 4.19e-01 73.6% 100.0%
4hstB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.54 39.0 4.02e-01 84.7% 83.8%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.53 37.0 4.08e-01 75.0% 100.0%
1cp9B02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.52 38.0 3.87e-01 86.1% 80.8%
3rbtD01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 38.0 3.27e-01 80.6% 67.2%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.87e-01 91.7% 87.1%
6ui4A02 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 40.0 3.15e-01 84.7% 49.0%
2db9A01 3.90.70.200 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Plus-3 domain 0.51 42.0 3.45e-01 90.3% 65.4%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 40.0 4.09e-01 90.3% 67.1%
4114744 2004.1.1.17 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.57 45.0 2.60e-01 88.9% 16.9%
3494145 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 33.0 2.86e-01 77.8% 33.9%
5044374 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 32.0 3.50e-01 80.6% 72.7%
5028087 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.54 40.0 3.56e-01 81.9% 87.8%
3947087 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.54 43.0 3.47e-01 91.7% 71.2%
3278279 300.1.1.12 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DUF5753 0.53 36.0 2.69e-01 70.8% 81.0%
5072502 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 29.0 3.23e-01 84.7% 69.0%
4354770 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.52 38.0 3.84e-01 91.7% 80.0%
4975151 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 30.0 3.29e-01 81.9% 72.7%
3685533 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.51 42.0 3.10e-01 95.8% 47.4%
3933890 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.50 36.0 3.19e-01 73.6% 73.0%
D2 medium residues 107-192
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wcyA01 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.63 34.0 3.66e-01 90.7% 58.7%
3gv4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 37.0 3.56e-01 80.2% 52.5%
4msxA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 36.0 3.55e-01 79.1% 53.8%
5trbA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 42.0 4.52e-01 72.1% 94.2%
1a9xB02 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.53 42.0 3.25e-01 90.7% 92.1%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3602534 375.1.1.199 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MJ0401 0.69 33.0 4.71e-01 74.4% 100.0%
4961835 377.9.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like 0.63 44.0 4.75e-01 79.1% 86.3%
4000318 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.56 34.0 3.97e-01 94.2% 86.7%
3737483 220.1.1.70 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_5 0.51 36.0 3.00e-01 76.7% 91.2%
4947615 3604.1.1.0 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.51 28.0 3.21e-01 95.3% 72.3%