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KF024725.1__AGT12724.1__PBI_WHIRLWIND_128__00116
Bact-VirKF024725.1__AGT12724.1__PBI_WHIRLWIND_128__00116
Identity
- Accession:
- KF024725 ↗
- Kingdom:
- phage
Quality
89.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Vilmaviridae›
Lumosvirus›
Mycobacterium_phage_Whirlwind
TaxID: 1340826
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-65
Domain cluster:
rep: ON045087.1__UPU15914.1__X__00088__D84-142
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fdyA02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.62 | 54.0 | 4.29e-01 | 100.0% | 47.8% |
| 3fgbA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 46.0 | 2.85e-01 | 79.4% | 100.0% |
| 2x4jA01 | 2.30.30.600 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 52.0 | 4.59e-01 | 100.0% | 68.6% |
| 2jngA00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 52.0 | 4.94e-01 | 98.4% | 97.4% |
| 3pieC09 | 2.30.30.750 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 54.0 | 4.65e-01 | 100.0% | 83.8% |
| 3hfqA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 45.0 | 2.82e-01 | 79.4% | 100.0% |
| 2ky9A01 | 2.30.30.1130 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 46.0 | 4.57e-01 | 84.1% | 89.6% |
| 4f7uF00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 49.0 | 4.78e-01 | 96.8% | 97.3% |
| 4m0wA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 51.0 | 4.06e-01 | 100.0% | 69.3% |
| 2ox7A02 | 2.30.30.290 | Mainly Beta › Roll › SH3 type barrels. › YopX-like domains | 0.59 | 50.0 | 4.87e-01 | 98.4% | 91.3% |
| 1ts9A00 | 2.30.30.210 | Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 | 0.58 | 49.0 | 4.29e-01 | 98.4% | 62.2% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 47.0 | 4.58e-01 | 98.4% | 98.6% |
| 1i2mB00 | 2.130.10.30 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II | 0.54 | 43.0 | 2.71e-01 | 93.7% | 98.5% |
| 2x65A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.54 | 41.0 | 2.61e-01 | 84.1% | 55.4% |
| 3x29A00 | 1.20.140.150 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.53 | 39.0 | 2.94e-01 | 81.0% | 70.5% |
| 1f8vC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 45.0 | 2.94e-01 | 100.0% | 75.6% |
| 4ifsA01 | 2.30.29.150 | Mainly Beta › Roll › PH-domain like › | 0.53 | 39.0 | 3.15e-01 | 81.0% | 66.7% |
| 7qs0A01 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.52 | 43.0 | 3.29e-01 | 100.0% | 90.8% |
| 4ffkA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.52 | 33.0 | 2.76e-01 | 81.0% | 32.5% |
| 1yg9A03 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.51 | 39.0 | 3.32e-01 | 87.3% | 83.8% |
| 3sh4A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 42.0 | 3.15e-01 | 100.0% | 86.7% |
| 2jj6A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 41.0 | 3.39e-01 | 100.0% | 94.0% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4162968 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.69 | 61.0 | 5.67e-01 | 100.0% | 97.5% |
| 3297614 | 4.1.1.296 ↗ | beta barrels › SH3 › SH3 › SH3 › TDBD | 0.68 | 56.0 | 4.77e-01 | 92.1% | 97.1% |
| 3817488 | 4.2.1.4 ↗ | beta barrels › SH3 › SAND › SAND › TDBD | 0.68 | 55.0 | 4.73e-01 | 92.1% | 98.1% |
| 3721973 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.66 | 56.0 | 5.29e-01 | 95.2% | 92.0% |
| 3652837 | 4.2.1.4 ↗ | beta barrels › SH3 › SAND › SAND › TDBD | 0.64 | 53.0 | 4.73e-01 | 93.7% | 80.0% |
| 3664710 | 4.2.1.4 ↗ | beta barrels › SH3 › SAND › SAND › TDBD | 0.63 | 51.0 | 4.70e-01 | 92.1% | 82.4% |
| 3729666 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 52.0 | 4.37e-01 | 93.7% | 68.2% |
| 3759446 | 4.1.1.73 ↗ | beta barrels › SH3 › SH3 › SH3 › Cul7 | 0.61 | 53.0 | 4.78e-01 | 100.0% | 84.4% |
| 3852920 | 633.23.1.4 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 | 0.60 | 44.0 | 3.12e-01 | 81.0% | 71.4% |
| 4003504 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.59 | 45.0 | 4.19e-01 | 82.5% | 90.0% |
| 3920610 | 633.23.1.2 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › GSG-1 | 0.59 | 44.0 | 3.17e-01 | 81.0% | 69.2% |
| 5037772 | 4.7.1.1 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 | 0.59 | 50.0 | 4.20e-01 | 98.4% | 54.9% |
| 5046193 | 4.7.1.1 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 | 0.59 | 49.0 | 4.45e-01 | 98.4% | 67.8% |
| 3517415 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.59 | 48.0 | 4.80e-01 | 90.5% | 93.8% |
| 3524525 | 633.23.1.4 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 | 0.58 | 43.0 | 3.02e-01 | 81.0% | 66.8% |
| 5068429 | 4.7.1.1 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 | 0.58 | 50.0 | 4.29e-01 | 100.0% | 63.5% |
| 3481770 | 4.1.1.220 ↗ | beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor | 0.57 | 50.0 | 4.62e-01 | 98.4% | 82.5% |
| 3505711 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.57 | 51.0 | 4.61e-01 | 100.0% | 83.5% |
| 4000622 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.57 | 49.0 | 4.01e-01 | 96.8% | 56.7% |
| 4012191 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 47.0 | 4.23e-01 | 98.4% | 95.8% |
| 3616769 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.56 | 48.0 | 4.27e-01 | 98.4% | 68.4% |
| 3975044 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.56 | 49.0 | 4.67e-01 | 100.0% | 97.3% |
| 3686772 | 1.1.7.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 | 0.56 | 48.0 | 3.99e-01 | 98.4% | 99.1% |
| 3502388 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 45.0 | 4.34e-01 | 95.2% | 77.3% |
| 3599576 | 63.1.1.0 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain | 0.55 | 41.0 | 3.06e-01 | 82.5% | 83.3% |
| 3697249 | 206.1.3.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M | 0.53 | 44.0 | 3.04e-01 | 100.0% | 81.6% |
| 4607576 | 4.1.1.370 ↗ | beta barrels › SH3 › SH3 › SH3 › PF28261 | 0.52 | 42.0 | 4.10e-01 | 93.7% | 91.4% |
| 145656 | 10.1.1.1 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 | 0.51 | 42.0 | 3.15e-01 | 100.0% | 86.7% |