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KF114878.1__AGS80655.1__LEP1GSC052_0081__00018
Bact-VirKF114878.1__AGS80655.1__LEP1GSC052_0081__00018
Identity
- Accession:
- KF114878 ↗
- Kingdom:
- phage
Quality
85.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 37-141
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bbyA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 37.0 | 4.28e-01 | 72.4% | 97.1% |
| 3pgvA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.56 | 38.0 | 3.92e-01 | 70.5% | 99.0% |
| 1uwwB00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 36.0 | 3.09e-01 | 93.3% | 41.3% |
| 1mppA02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.53 | 38.0 | 3.24e-01 | 76.2% | 62.9% |
| 2i4lA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 37.0 | 2.62e-01 | 74.3% | 81.8% |
| 4lq0A02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 38.0 | 3.44e-01 | 79.0% | 92.5% |
| 2co5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 36.0 | 3.78e-01 | 73.3% | 87.0% |
| 3ko2A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.50 | 39.0 | 3.41e-01 | 82.9% | 86.3% |
| 2xubA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 35.0 | 3.94e-01 | 78.1% | 100.0% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3782381 | 101.1.2.407 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 | 0.59 | 45.0 | 4.30e-01 | 81.9% | 85.6% |
| 3166551 | 101.1.2.407 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 | 0.58 | 45.0 | 4.30e-01 | 81.9% | 86.7% |
| 3502634 | 101.1.2.503 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25875 | 0.56 | 35.0 | 4.19e-01 | 70.5% | 100.0% |
| 5018084 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 39.0 | 3.95e-01 | 71.4% | 81.9% |
| 2076029 | 3012.1.1.4 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 | 0.56 | 38.0 | 3.90e-01 | 70.5% | 98.0% |
| 4012849 | 304.20.1.0 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain | 0.55 | 40.0 | 3.46e-01 | 76.2% | 82.9% |
| 3199434 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 36.0 | 3.88e-01 | 73.3% | 80.0% |
| 4979624 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.55 | 42.0 | 4.23e-01 | 83.8% | 89.1% |
| 5041641 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.55 | 37.0 | 4.27e-01 | 77.1% | 98.7% |
| 5010522 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 41.0 | 4.32e-01 | 80.0% | 100.0% |
| 5006536 | 101.1.2.150 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_45 | 0.53 | 37.0 | 3.92e-01 | 73.3% | 83.3% |
| 5069873 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 36.0 | 3.89e-01 | 74.3% | 85.9% |
| 3579998 | 101.1.2.83 ↗ | alpha arrays › HTH › HTH › winged helix domain › SKA1 | 0.53 | 42.0 | 3.92e-01 | 85.7% | 99.2% |
| 3583168 | 101.1.2.490 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_CHMP7 | 0.53 | 37.0 | 3.67e-01 | 73.3% | 70.0% |
| 3762392 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.53 | 39.0 | 3.09e-01 | 78.1% | 74.0% |
| 5075143 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.52 | 39.0 | 3.17e-01 | 79.0% | 75.6% |
| 4119221 | 327.16.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N | 0.52 | 26.0 | 3.14e-01 | 76.2% | 72.3% |
| 3405902 | 101.1.2.177 ↗ | alpha arrays › HTH › HTH › winged helix domain › MARF1_LOTUS | 0.52 | 36.0 | 3.97e-01 | 75.2% | 93.8% |
| 4025019 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.52 | 36.0 | 3.41e-01 | 72.4% | 99.2% |
| 4683271 | 327.16.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N | 0.51 | 26.0 | 3.01e-01 | 75.2% | 68.6% |
| 4965712 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.51 | 36.0 | 3.81e-01 | 75.2% | 100.0% |
| 5079941 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 34.0 | 3.88e-01 | 75.2% | 94.7% |
| 3169141 | 304.20.1.2 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D3 | 0.51 | 38.0 | 3.21e-01 | 80.0% | 83.2% |
| 4033853 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.51 | 35.0 | 3.56e-01 | 70.5% | 100.0% |
| 4937110 | 101.1.2.128 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF2582 | 0.50 | 32.0 | 3.62e-01 | 73.3% | 89.3% |
| 5001113 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 34.0 | 3.59e-01 | 71.4% | 81.1% |
D2
medium
residues 11-35_144-203
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kzsA02 | 6.10.140.1870 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 47.0 | 5.11e-01 | 70.6% | 78.6% |
| 3nrxA00 | 1.20.58.1520 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 50.0 | 4.37e-01 | 70.6% | 62.6% |
| 3g9gA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.69 | 46.0 | 3.28e-01 | 70.6% | 23.6% |
| 6a7hA01 | 1.20.140.180 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.67 | 49.0 | 4.24e-01 | 76.5% | 67.4% |
| 2oduA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 49.0 | 4.55e-01 | 76.5% | 76.2% |
| 3fcnA00 | 1.20.1220.20 | Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Uncharcterised protein PF01724 | 0.66 | 51.0 | 4.09e-01 | 81.2% | 61.4% |
| 3onjA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.66 | 46.0 | 4.42e-01 | 72.9% | 77.3% |
| 2i2oA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.63 | 49.0 | 3.71e-01 | 84.7% | 51.2% |
| 2dnxA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 42.0 | 3.73e-01 | 71.8% | 66.2% |
| 5nl6A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 42.0 | 3.94e-01 | 71.8% | 71.3% |
| 3cwzB01 | 1.20.58.900 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain | 0.61 | 44.0 | 3.67e-01 | 75.3% | 57.5% |
| 2y1vA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 52.0 | 4.12e-01 | 97.6% | 69.2% |
| 4gx0A01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 38.0 | 3.60e-01 | 90.6% | 52.4% |
| 8cdaB03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.59 | 49.0 | 3.97e-01 | 89.4% | 56.6% |
| 6yz2A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.58 | 49.0 | 4.32e-01 | 89.4% | 65.0% |
| 3eabE00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.58 | 44.0 | 4.45e-01 | 81.2% | 84.9% |
| 1aj3A00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 40.0 | 3.84e-01 | 71.8% | 80.6% |
| 1uouA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.55 | 32.0 | 3.52e-01 | 70.6% | 70.6% |
| 5fglA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 40.0 | 3.15e-01 | 83.5% | 68.0% |
| 2c35A00 | 1.20.1250.40 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › RNA Polymerase II, Rpb4 subunit | 0.52 | 37.0 | 3.27e-01 | 75.3% | 86.7% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3703494 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.71 | 49.0 | 4.45e-01 | 70.6% | 65.5% |
| 3924651 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.70 | 48.0 | 4.61e-01 | 70.6% | 77.9% |
| 4025776 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.68 | 47.0 | 4.60e-01 | 71.8% | 84.2% |
| 3473220 | 5086.1.1.209 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › LIN9_C | 0.68 | 50.0 | 4.51e-01 | 77.6% | 79.1% |
| 3925930 | 604.6.1.1 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT | 0.67 | 49.0 | 4.69e-01 | 76.5% | 73.0% |
| 3222544 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.67 | 49.0 | 4.24e-01 | 76.5% | 63.8% |
| 3648687 | 604.12.1.89 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › CDP-OH_P_transf | 0.67 | 46.0 | 4.49e-01 | 71.8% | 75.8% |
| 5071514 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.67 | 45.0 | 4.80e-01 | 71.8% | 78.7% |
| 4017639 | 1065.1.1.0 ↗ | alpha bundles › SPX domain › SPX domain › SPX domain | 0.67 | 46.0 | 3.66e-01 | 71.8% | 61.7% |
| 3241365 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.64 | 44.0 | 3.60e-01 | 70.6% | 88.1% |
| 3448091 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.61 | 47.0 | 4.22e-01 | 81.2% | 82.5% |
| 3194153 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.61 | 42.0 | 4.08e-01 | 71.8% | 80.0% |
| 3704699 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.60 | 42.0 | 4.13e-01 | 72.9% | 78.9% |
| 3817995 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.60 | 48.0 | 3.91e-01 | 85.9% | 67.1% |
| 5006655 | 5069.1.1.2 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ni_hydr_CYTB | 0.59 | 45.0 | 3.39e-01 | 81.2% | 57.7% |
| 4496489 | 2498.4.1.0 ↗ | mixed a+b and a/b › Zincin-like › HSP90 C-terminal domain (C-terminal part of Pfam 00183) › HSP90 C-terminal domain (C-terminal part of Pfam 00183) | 0.59 | 44.0 | 3.27e-01 | 78.8% | 36.6% |
| 3992612 | 604.6.1.1 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT | 0.58 | 42.0 | 4.20e-01 | 76.5% | 84.4% |
| 4999123 | 604.12.1.135 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Oxidored_q2 | 0.58 | 42.0 | 3.96e-01 | 77.6% | 65.7% |
| 3211184 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.57 | 42.0 | 4.19e-01 | 78.8% | 82.2% |
| 3614754 | 5.1.4.301 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7 | 0.55 | 40.0 | 2.48e-01 | 76.5% | 14.7% |
| 3422289 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.54 | 44.0 | 3.97e-01 | 89.4% | 74.2% |
| 4975050 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.54 | 38.0 | 3.99e-01 | 87.1% | 82.7% |
| 4026983 | 604.1.1.135 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF155 | 0.53 | 45.0 | 3.41e-01 | 96.5% | 86.8% |
| 3381172 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.51 | 40.0 | 3.77e-01 | 88.2% | 81.7% |