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KF114878.1__AGS80673.1__LEP1GSC052_0076__00013
Bact-VirKF114878.1__AGS80673.1__LEP1GSC052_0076__00013
Identity
- Accession:
- KF114878 ↗
- Kingdom:
- phage
Quality
90.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 753-844
Domain cluster:
rep: KF114878.1__AGS80661.1__LEP1GSC052_0078__00014__D253-339
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19955.6 best | EAD1 | 37.0 | 5.30e-09 | 95.7% | 92.2% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2n00A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.70 | 60.0 | 6.01e-01 | 100.0% | 93.7% |
| 2a5yB01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.69 | 61.0 | 5.83e-01 | 100.0% | 84.4% |
| 7dniB01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.67 | 56.0 | 5.68e-01 | 91.3% | 93.3% |
| 5dqqA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 52.0 | 4.62e-01 | 100.0% | 63.6% |
| 2cclB00 | 1.10.1330.10 | Mainly Alpha › Orthogonal Bundle › Type 1 dockerin domain › Dockerin domain | 0.61 | 30.0 | 3.58e-01 | 84.8% | 69.4% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.60 | 42.0 | 4.34e-01 | 98.9% | 77.9% |
| 4bjmC00 | 1.20.58.1680 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 46.0 | 3.54e-01 | 100.0% | 37.2% |
| 1nklA00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.55 | 32.0 | 3.47e-01 | 92.4% | 66.7% |
| 1cqxA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 45.0 | 3.89e-01 | 93.5% | 84.0% |
| 3cvvA02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 37.0 | 3.31e-01 | 70.7% | 69.5% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4441062 | 3962.1.1.3 ↗ | alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit › YtxK_like | 0.68 | 44.0 | 4.56e-01 | 100.0% | 70.6% |
| 3920796 | 110.1.1.1 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death | 0.66 | 57.0 | 5.70e-01 | 96.7% | 100.0% |
| 3775373 | 110.1.1.1 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death | 0.63 | 56.0 | 5.28e-01 | 100.0% | 84.5% |
| 3617896 | 110.1.1.1 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death | 0.61 | 50.0 | 5.13e-01 | 93.5% | 97.6% |
| 3943313 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.56 | 33.0 | 3.11e-01 | 82.6% | 45.2% |
| 3839950 | 601.7.1.57 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN_Apea | 0.55 | 43.0 | 3.89e-01 | 83.7% | 83.2% |
| 3421373 | 103.1.1.34 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PIR2-like_helical | 0.54 | 42.0 | 2.99e-01 | 83.7% | 42.0% |
| 3951387 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.53 | 35.0 | 3.54e-01 | 94.6% | 68.9% |
| 5076514 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.52 | 35.0 | 3.54e-01 | 94.6% | 67.4% |
| 5026575 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.52 | 44.0 | 3.57e-01 | 95.7% | 100.0% |
| 3694404 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.51 | 45.0 | 3.40e-01 | 100.0% | 72.6% |
| 3961632 | 620.1.1.5 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › MDMPI_N | 0.50 | 39.0 | 3.55e-01 | 87.0% | 85.9% |
D2
medium
residues 1-127_152-185
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20012.5 best | GAP1-N1 | 87.2 | 1.10e-24 | 63.3% | 99.0% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4r3aA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.65 | 47.0 | 4.60e-01 | 73.9% | 96.0% |
| 1p0zA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.62 | 34.0 | 3.75e-01 | 75.8% | 63.4% |
| 3by8A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.60 | 34.0 | 3.67e-01 | 76.4% | 63.9% |
| 3h9wA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 36.0 | 4.28e-01 | 91.3% | 100.0% |
| 3k3dA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 36.0 | 3.99e-01 | 91.3% | 84.9% |
| 4hiaA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 47.0 | 4.61e-01 | 95.0% | 89.8% |
| 6zj8D01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 32.0 | 3.77e-01 | 72.0% | 84.2% |
| 3volA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 38.0 | 4.05e-01 | 90.7% | 84.8% |
| 4f3lA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 37.0 | 4.11e-01 | 90.7% | 94.3% |
| 2qkpD00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 35.0 | 3.79e-01 | 74.5% | 82.1% |
| 5iu1B00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 35.0 | 4.11e-01 | 90.7% | 99.1% |
| 4hoiB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 34.0 | 4.01e-01 | 92.5% | 97.4% |
| 1yloE02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.51 | 27.0 | 3.50e-01 | 93.8% | 95.2% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3272081 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.77 | 56.0 | 5.56e-01 | 75.2% | 84.1% |
| 3625217 | 223.2.1.37 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like | 0.76 | 56.0 | 5.17e-01 | 75.2% | 75.0% |
| 4022522 | 223.2.1.48 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N, Longin_2 | 0.76 | 56.0 | 5.48e-01 | 75.8% | 98.3% |
| 3741114 | 223.2.1.29 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DENND11 | 0.76 | 55.0 | 5.53e-01 | 73.9% | 100.0% |
| 3722982 | 223.2.1.29 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DENND11 | 0.74 | 53.0 | 5.78e-01 | 73.3% | 94.1% |
| 3929223 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.74 | 54.0 | 5.46e-01 | 74.5% | 98.8% |
| 3474795 | 223.2.1.34 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 | 0.74 | 55.0 | 5.16e-01 | 76.4% | 98.9% |
| 4971260 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.73 | 54.0 | 5.93e-01 | 75.2% | 100.0% |
| 3210750 | 223.2.1.48 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N, Longin_2 | 0.73 | 54.0 | 5.67e-01 | 75.8% | 100.0% |
| 5051461 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.73 | 54.0 | 5.36e-01 | 77.0% | 93.5% |
| 3244287 | 223.2.1.34 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 | 0.72 | 53.0 | 5.28e-01 | 76.4% | 97.6% |
| 5053322 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.72 | 52.0 | 5.47e-01 | 73.9% | 100.0% |
| 3740938 | 223.2.1.34 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 | 0.72 | 53.0 | 5.25e-01 | 75.2% | 88.5% |
| 3514322 | 223.2.1.37 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like | 0.72 | 53.0 | 5.28e-01 | 75.8% | 85.5% |
| 3711910 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.71 | 52.0 | 5.21e-01 | 73.9% | 92.5% |
| 3168866 | 223.2.1.34 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 | 0.71 | 52.0 | 5.26e-01 | 75.8% | 98.2% |
| 4258974 | 223.2.1.23 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › NPR3 | 0.71 | 53.0 | 5.26e-01 | 76.4% | 100.0% |
| 3781073 | 223.2.1.29 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DENND11 | 0.71 | 52.0 | 5.60e-01 | 76.4% | 97.9% |
| 3940520 | 223.2.1.34 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 | 0.71 | 52.0 | 5.36e-01 | 76.4% | 100.0% |
| 4947508 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.70 | 51.0 | 5.78e-01 | 75.2% | 97.6% |
| 5049973 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.68 | 51.0 | 5.42e-01 | 76.4% | 99.3% |
| 4947810 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.68 | 49.0 | 5.63e-01 | 73.9% | 100.0% |
| 4943663 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.68 | 50.0 | 5.11e-01 | 75.2% | 98.1% |
| 5052185 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.68 | 50.0 | 5.50e-01 | 75.8% | 100.0% |
| 3967125 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.68 | 37.0 | 3.79e-01 | 73.9% | 54.2% |
| 3596272 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.68 | 55.0 | 4.95e-01 | 85.7% | 91.8% |
| 3609703 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.66 | 58.0 | 5.85e-01 | 91.9% | 100.0% |
| 3704579 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.65 | 58.0 | 5.75e-01 | 93.2% | 95.2% |
| 4431434 | 223.1.1.43 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › CusS | 0.63 | 34.0 | 3.35e-01 | 73.9% | 47.6% |
| 3724891 | 223.2.1.28 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Afi1 | 0.63 | 54.0 | 5.37e-01 | 91.9% | 95.9% |
| 3779994 | 223.2.1.34 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 | 0.63 | 54.0 | 5.37e-01 | 90.7% | 97.0% |
| 4195296 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.62 | 37.0 | 4.38e-01 | 72.7% | 86.4% |
| 3985962 | 223.1.1.53 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_6 | 0.62 | 39.0 | 4.20e-01 | 74.5% | 74.1% |
| 3536437 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.61 | 50.0 | 5.30e-01 | 90.1% | 96.6% |
| 5016022 | 223.1.1.157 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_3 | 0.61 | 36.0 | 3.83e-01 | 89.4% | 64.3% |
| 4066540 | 223.1.1.134 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF30516 | 0.61 | 36.0 | 3.43e-01 | 75.8% | 48.4% |
| 3998298 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.61 | 43.0 | 3.97e-01 | 90.7% | 56.2% |
| 3978531 | 223.1.1.58 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › 2CSK_N | 0.60 | 32.0 | 3.34e-01 | 75.2% | 53.5% |
| 5041222 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.59 | 39.0 | 4.24e-01 | 74.5% | 80.8% |
| 4216341 | 223.1.1.132 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS, sCache_3_2 | 0.58 | 38.0 | 3.01e-01 | 91.3% | 33.3% |
| 4400500 | 223.1.1.132 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS, sCache_3_2 | 0.57 | 36.0 | 2.97e-01 | 91.3% | 34.2% |
| 4980695 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.56 | 37.0 | 4.39e-01 | 90.1% | 97.3% |
| 5083856 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.56 | 35.0 | 4.11e-01 | 90.7% | 88.7% |
| 5047292 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.55 | 36.0 | 4.28e-01 | 91.3% | 97.3% |
| 5051876 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.55 | 37.0 | 4.16e-01 | 91.3% | 88.0% |
| 5040002 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.54 | 36.0 | 4.21e-01 | 88.8% | 93.9% |
| 5080022 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.54 | 38.0 | 4.05e-01 | 89.4% | 79.3% |
| 4299844 | 223.1.1.135 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Sensor_TM1, Stimulus_sens_1 | 0.54 | 32.0 | 3.20e-01 | 73.9% | 53.5% |
| 5018023 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.54 | 37.0 | 4.01e-01 | 75.8% | 83.7% |
| 5039826 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.54 | 36.0 | 4.19e-01 | 90.7% | 95.7% |
| 3973879 | 223.1.1.24 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 | 0.53 | 38.0 | 3.87e-01 | 72.0% | 89.0% |
| 5006186 | 223.1.1.54 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE4 | 0.53 | 43.0 | 3.71e-01 | 98.1% | 55.5% |
| 5006502 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.53 | 38.0 | 3.52e-01 | 93.2% | 58.5% |
| 4955365 | 223.1.1.27 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 | 0.52 | 35.0 | 3.80e-01 | 74.5% | 82.2% |
| 5067842 | 223.1.1.27 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 | 0.51 | 34.0 | 3.60e-01 | 75.2% | 75.7% |
| 4945413 | 223.1.1.27 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 | 0.50 | 34.0 | 3.63e-01 | 75.2% | 79.3% |
D3
medium
residues 128-151_186-225
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qz9A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.59 | 50.0 | 3.39e-01 | 100.0% | 70.1% |
| 2f7lA03 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.57 | 48.0 | 4.25e-01 | 98.4% | 89.8% |
D4
medium
residues 226-310
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jqtA00 | 1.20.1280.40 | Mainly Alpha › Up-down Bundle › Monooxygenase › HHA | 0.59 | 34.0 | 3.90e-01 | 83.5% | 82.5% |
| 6wv5A01 | 1.20.1440.130 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain | 0.56 | 44.0 | 3.81e-01 | 85.9% | 94.9% |
| 1mhyG02 | 1.20.1280.30 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 | 0.55 | 38.0 | 4.07e-01 | 71.8% | 84.9% |
| 4bxoA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.53 | 36.0 | 3.93e-01 | 80.0% | 89.6% |
| 3nrgA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 39.0 | 2.96e-01 | 81.2% | 47.0% |
| 2rdcA00 | 1.10.287.800 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 | 0.52 | 36.0 | 3.21e-01 | 74.1% | 88.0% |
| 3cf6E03 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.51 | 43.0 | 3.80e-01 | 94.1% | 91.6% |
| 5tj5E00 | 1.20.120.610 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase | 0.51 | 36.0 | 3.11e-01 | 72.9% | 95.7% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.50 | 39.0 | 3.97e-01 | 92.9% | 86.7% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5022298 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.60 | 42.0 | 4.39e-01 | 81.2% | 81.3% |
| 3587256 | 633.22.1.0 ↗ | alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) | 0.59 | 52.0 | 4.09e-01 | 98.8% | 51.9% |
| 2643652 | 640.1.1.1 ↗ | alpha arrays › Methane monooxygenase hydrolase gamma subunit-like › Methane monooxygenase hydrolase gamma subunit › Methane monooxygenase hydrolase gamma subunit › MeMO_Hyd_G | 0.57 | 39.0 | 3.15e-01 | 71.8% | 36.3% |
| 5038668 | 4266.2.1.0 ↗ | alpha bundles › Hyaluronidase domain-like › TTHA0068-like › TTHA0068-like | 0.57 | 43.0 | 4.30e-01 | 87.1% | 77.8% |
| 3715208 | 608.1.1.2 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › PA26 | 0.56 | 41.0 | 3.32e-01 | 78.8% | 88.8% |
| 3211335 | 3755.4.1.30 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › TMEM107 | 0.55 | 38.0 | 3.43e-01 | 72.9% | 91.2% |
| 3491190 | 544.1.1.0 ↗ | alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 | 0.54 | 40.0 | 3.86e-01 | 83.5% | 98.1% |
| 3236455 | 3470.1.1.35 ↗ | extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › DUF19 | 0.53 | 45.0 | 3.60e-01 | 98.8% | 52.1% |
| 4935433 | 606.1.1.1 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop | 0.53 | 39.0 | 3.61e-01 | 85.9% | 59.1% |
D5
medium
residues 311-382
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4jgiA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.63 | 52.0 | 5.10e-01 | 94.4% | 92.5% |
| 1f20A01 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.54 | 44.0 | 3.44e-01 | 93.1% | 73.6% |
| 1dk8A02 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.54 | 45.0 | 4.29e-01 | 94.4% | 78.8% |
| 1wtjB01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.52 | 35.0 | 3.26e-01 | 72.2% | 81.4% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3328204 | 109.4.1.361 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NPH3 | 0.61 | 53.0 | 3.89e-01 | 100.0% | 40.0% |
| 4331100 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.53 | 43.0 | 4.01e-01 | 94.4% | 78.9% |
| 3700331 | 5048.1.1.1 ↗ | alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › MIP | 0.50 | 39.0 | 2.86e-01 | 93.1% | 82.0% |
D6
medium
residues 525-672
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4c0eA01 | 1.25.40.790 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.66 | 60.0 | 4.85e-01 | 99.3% | 80.2% |
| 5vjcA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.64 | 58.0 | 4.80e-01 | 100.0% | 89.7% |
| 2p0vA01 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.64 | 46.0 | 3.26e-01 | 73.0% | 60.4% |
| 3au3A00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.63 | 56.0 | 4.53e-01 | 100.0% | 82.1% |
| 4u2xF00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.60 | 54.0 | 5.15e-01 | 98.0% | 95.4% |
| 3b34A05 | 1.25.50.10 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain | 0.58 | 51.0 | 4.06e-01 | 100.0% | 51.7% |
| 7fhyB01 | 1.50.10.100 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase | 0.54 | 48.0 | 3.89e-01 | 97.3% | 74.9% |
| 1sqmA04 | 1.25.40.320 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Peptidase M1, leukotriene A4 hydrolase/aminopeptidase C-terminal domain | 0.54 | 47.0 | 4.74e-01 | 98.0% | 98.7% |
| 2ggfA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 43.0 | 4.49e-01 | 94.6% | 94.2% |
| 4crwA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 46.0 | 4.07e-01 | 96.6% | 99.1% |
| 2ntxA02 | 1.20.58.1310 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 2 | 0.53 | 31.0 | 3.65e-01 | 72.3% | 82.5% |
| 4ga6A02 | 1.20.970.50 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › | 0.53 | 45.0 | 4.49e-01 | 90.5% | 94.7% |
| 4flbA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 43.0 | 4.49e-01 | 91.2% | 100.0% |
| 3e4bA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 44.0 | 3.35e-01 | 96.6% | 40.0% |
| 3efzB00 | 1.20.190.20 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain | 0.51 | 38.0 | 3.35e-01 | 78.4% | 73.3% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3435198 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 60.0 | 3.85e-01 | 100.0% | 30.7% |
| 3520863 | 109.4.1.472 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RAI16-like | 0.64 | 57.0 | 4.42e-01 | 100.0% | 67.2% |
| 3866016 | 109.4.1.472 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RAI16-like | 0.64 | 57.0 | 4.23e-01 | 100.0% | 62.2% |
| 3737232 | 109.4.1.16 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF | 0.64 | 57.0 | 4.23e-01 | 100.0% | 62.2% |
| 3498768 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 57.0 | 4.10e-01 | 99.3% | 57.0% |
| 4281430 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 53.0 | 4.46e-01 | 96.6% | 95.0% |
| 3219854 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 54.0 | 4.63e-01 | 98.6% | 100.0% |
| 3605877 | 109.4.1.1164 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › zf-MYND | 0.60 | 54.0 | 4.15e-01 | 100.0% | 54.1% |
| 3496708 | 109.4.1.914 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_Ints3_C | 0.60 | 47.0 | 4.78e-01 | 84.5% | 99.3% |
| 3168206 | 109.4.1.70 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID | 0.57 | 43.0 | 4.42e-01 | 79.1% | 93.6% |
| 3356212 | 109.4.1.1279 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long, TPR_24 | 0.56 | 50.0 | 4.26e-01 | 100.0% | 63.5% |
| 3765757 | 622.6.1.0 ↗ | alpha bundles › YvfG-like › NLR family member X1 C-terminal domain › NLR family member X1 C-terminal domain | 0.56 | 50.0 | 3.68e-01 | 100.0% | 48.0% |
| 1891410 | 109.4.1.87 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec6 | 0.56 | 47.0 | 3.24e-01 | 93.9% | 48.9% |
| 4950102 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.55 | 49.0 | 4.81e-01 | 100.0% | 98.8% |
| 3877341 | 109.4.1.87 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec6 | 0.55 | 48.0 | 4.36e-01 | 95.9% | 95.5% |
| 3612156 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 46.0 | 4.53e-01 | 96.6% | 84.8% |
| 3785131 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 47.0 | 3.36e-01 | 100.0% | 52.4% |
| 3677972 | 109.27.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › NPH3 | 0.51 | 37.0 | 4.14e-01 | 75.0% | 100.0% |
| 3851492 | 109.4.1.383 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PI3K_1B_p101 | 0.51 | 45.0 | 3.79e-01 | 98.0% | 77.3% |
D7
medium
residues 673-739
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3wirA02 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.68 | 58.0 | 3.67e-01 | 100.0% | 43.3% |
| 1vctA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.68 | 48.0 | 4.11e-01 | 74.6% | 78.9% |
| 3ltjA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.65 | 54.0 | 4.07e-01 | 100.0% | 37.7% |
| 3ut4A00 | 1.25.40.750 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Domain of unknown function DUF5071 | 0.65 | 54.0 | 4.52e-01 | 98.5% | 70.3% |
| 3kp9A01 | 1.20.1440.130 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain | 0.62 | 42.0 | 3.23e-01 | 71.6% | 63.0% |
| 4u72A01 | 1.20.58.480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 52.0 | 3.76e-01 | 100.0% | 81.1% |
| 2xvtC00 | 1.10.150.510 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family | 0.62 | 42.0 | 4.06e-01 | 71.6% | 83.5% |
| 5m29A01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.61 | 39.0 | 3.25e-01 | 83.6% | 36.1% |
| 2i0mA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.61 | 43.0 | 3.71e-01 | 73.1% | 80.2% |
| 6wv5A01 | 1.20.1440.130 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain | 0.60 | 42.0 | 3.44e-01 | 76.1% | 61.8% |
| 1vb5A01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.57 | 44.0 | 4.06e-01 | 91.0% | 76.6% |
| 3oxfA05 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 43.0 | 4.24e-01 | 88.1% | 93.3% |
| 6iumA01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.54 | 44.0 | 3.02e-01 | 95.5% | 59.4% |
| 4i3vA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.54 | 42.0 | 2.91e-01 | 95.5% | 22.7% |
| 1wwmA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.52 | 40.0 | 3.08e-01 | 88.1% | 75.0% |
| 1z6oA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 36.0 | 2.71e-01 | 76.1% | 67.0% |
| 2yqyA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.51 | 40.0 | 3.35e-01 | 89.6% | 67.5% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.50 | 35.0 | 3.16e-01 | 73.1% | 61.6% |
| 3t5qG01 | 1.10.150.550 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Arenavirus nucleocapsid protein, head domain | 0.50 | 36.0 | 3.26e-01 | 80.6% | 94.2% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3232906 | 109.4.1.144 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ints3_N | 0.74 | 59.0 | 4.36e-01 | 88.1% | 40.0% |
| 3813958 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.73 | 63.0 | 4.70e-01 | 100.0% | 43.9% |
| 3704520 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 61.0 | 4.22e-01 | 100.0% | 31.8% |
| 5018948 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.71 | 50.0 | 4.27e-01 | 74.6% | 78.2% |
| 3952850 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.69 | 55.0 | 4.35e-01 | 86.6% | 76.3% |
| 3595830 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.68 | 61.0 | 3.39e-01 | 100.0% | 7.9% |
| 3826 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.68 | 48.0 | 4.24e-01 | 74.6% | 86.9% |
| 4462190 | 109.4.1.1283 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_PBS, HEAT_2 | 0.68 | 59.0 | 4.02e-01 | 100.0% | 28.8% |
| 3338734 | 109.4.1.1258 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 | 0.65 | 58.0 | 4.79e-01 | 100.0% | 65.8% |
| 3833881 | 6155.1.1.16 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PF28566 | 0.65 | 53.0 | 4.34e-01 | 92.5% | 70.8% |
| 3361961 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.64 | 57.0 | 4.10e-01 | 100.0% | 41.0% |
| 4133205 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.59 | 45.0 | 4.14e-01 | 88.1% | 76.8% |
| 3719358 | 3883.1.1.1 ↗ | alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf | 0.59 | 41.0 | 2.89e-01 | 74.6% | 68.3% |
| 3199378 | 6088.1.1.1 ↗ | alpha arrays › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › 4HB | 0.55 | 38.0 | 3.45e-01 | 71.6% | 64.4% |
| 5067920 | 3883.1.1.1 ↗ | alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf | 0.52 | 44.0 | 3.30e-01 | 95.5% | 88.8% |