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KF147891.1__AGS81920.1__PaBG_00036__00036
Bact-VirKF147891.1__AGS81920.1__PaBG_00036__00036
Identity
- Accession:
- KF147891 ↗
- Kingdom:
- phage
Quality
90.4
mean pLDDT
Taxonomy
TaxID: 1335230
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-107
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gb5A01 | 3.90.79.20 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › | 0.61 | 42.0 | 3.87e-01 | 90.9% | 53.4% |
| 4rg1A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 34.0 | 4.10e-01 | 72.7% | 93.8% |
| 1b3qA04 | 2.40.50.180 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 | 0.55 | 32.0 | 3.81e-01 | 96.0% | 88.9% |
| 1jt8A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 32.0 | 3.25e-01 | 98.0% | 53.9% |
| 3ntkB01 | 2.40.50.790 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 41.0 | 4.30e-01 | 81.8% | 98.8% |
| 4j7hA02 | 3.90.79.40 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › EvaA sugar 2,3-dehydratase subunit | 0.53 | 39.0 | 3.35e-01 | 77.8% | 69.1% |
| 3k6oA01 | 2.40.50.500 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain | 0.53 | 36.0 | 4.09e-01 | 79.8% | 97.3% |
| 4ifdG01 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.51 | 31.0 | 3.72e-01 | 75.8% | 96.7% |
| 4qmgC01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 43.0 | 3.84e-01 | 99.0% | 84.9% |
| 2ba0A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 38.0 | 4.03e-01 | 77.8% | 88.5% |
| 3tdqA00 | 2.40.50.320 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF | 0.51 | 34.0 | 3.59e-01 | 74.7% | 79.1% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4108510 | 221.2.1.1 ↗ | a+b two layers › beta-Grasp › IF3-N › IF3-N › IF3_N | 0.64 | 38.0 | 4.21e-01 | 71.7% | 73.8% |
| 4945258 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.61 | 34.0 | 3.58e-01 | 92.9% | 57.8% |
| 4964062 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.57 | 36.0 | 3.82e-01 | 72.7% | 71.1% |
| 3511418 | 2.1.1.38 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_RNB | 0.56 | 37.0 | 4.27e-01 | 78.8% | 94.3% |
| 3832696 | 1.1.11.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 | 0.56 | 39.0 | 3.79e-01 | 72.7% | 97.4% |
| 3386087 | 2.1.1.65 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB_2 | 0.56 | 36.0 | 3.98e-01 | 98.0% | 81.2% |
| 3813512 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.56 | 39.0 | 3.82e-01 | 72.7% | 90.9% |
| 3999674 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.56 | 38.0 | 4.15e-01 | 72.7% | 86.3% |
| 5006716 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.55 | 35.0 | 3.78e-01 | 71.7% | 75.3% |
| 3435395 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.55 | 38.0 | 2.95e-01 | 70.7% | 35.1% |
| 3932780 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.55 | 35.0 | 3.55e-01 | 83.8% | 64.0% |
| 4964989 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.55 | 37.0 | 3.62e-01 | 72.7% | 62.7% |
| 3957861 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.55 | 38.0 | 3.89e-01 | 71.7% | 75.8% |
| 3804183 | 1.1.11.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 | 0.54 | 37.0 | 3.68e-01 | 71.7% | 97.2% |
| 4090273 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.54 | 39.0 | 3.84e-01 | 73.7% | 76.9% |
| 3630421 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.54 | 39.0 | 3.97e-01 | 73.7% | 92.6% |
| 3621173 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.54 | 37.0 | 4.06e-01 | 73.7% | 87.5% |
| 4218294 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.54 | 37.0 | 3.88e-01 | 70.7% | 80.0% |
| 3430671 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.54 | 38.0 | 3.57e-01 | 74.7% | 84.8% |
| 4665956 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 37.0 | 3.91e-01 | 71.7% | 83.3% |
| 3315828 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.53 | 37.0 | 4.03e-01 | 70.7% | 91.3% |
| 4437479 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 34.0 | 3.99e-01 | 70.7% | 94.3% |
| 4682066 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.53 | 37.0 | 3.84e-01 | 72.7% | 77.4% |
| 4167417 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.52 | 36.0 | 3.87e-01 | 70.7% | 82.4% |
| 3799466 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 35.0 | 3.80e-01 | 73.7% | 81.2% |
| 5061616 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.52 | 37.0 | 3.85e-01 | 72.7% | 97.8% |
| 4021136 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 38.0 | 3.91e-01 | 77.8% | 90.5% |
| 4952387 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.52 | 37.0 | 3.50e-01 | 74.7% | 66.4% |
| 3807059 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.51 | 44.0 | 3.66e-01 | 99.0% | 94.1% |
| 5000512 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.51 | 36.0 | 3.61e-01 | 72.7% | 74.0% |
| 3410967 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.51 | 40.0 | 4.14e-01 | 85.9% | 92.6% |
| 3813848 | 1.1.11.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 | 0.50 | 35.0 | 3.47e-01 | 71.7% | 100.0% |
| 3277340 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.50 | 43.0 | 3.78e-01 | 99.0% | 85.6% |
| 3944434 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 37.0 | 3.82e-01 | 79.8% | 98.9% |
D2
high
residues 148-205
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1z2qA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.69 | 53.0 | 4.69e-01 | 82.8% | 58.3% |
| 4uy8X00 | 2.30.170.40 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 | 0.69 | 47.0 | 4.34e-01 | 72.4% | 80.5% |
| 1vx7000 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.64 | 44.0 | 4.33e-01 | 72.4% | 67.7% |
| 4uf0A03 | 2.10.110.20 | Mainly Beta › Ribbon › Cysteine Rich Protein › | 0.56 | 46.0 | 4.42e-01 | 87.9% | 78.5% |
| 1el6A03 | 3.90.1160.10 | Alpha Beta › Alpha-Beta Complex › Baseplate Structural Protein Gp11; Chain: A, domain 3 › Baseplate structural protein gp11, finger domain | 0.51 | 41.0 | 3.35e-01 | 87.9% | 51.4% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3739083 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.79 | 60.0 | 5.50e-01 | 81.0% | 65.3% |
| 3865964 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.79 | 63.0 | 5.25e-01 | 84.5% | 53.7% |
| 5032367 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.76 | 61.0 | 5.00e-01 | 86.2% | 50.0% |
| 4355340 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.72 | 52.0 | 5.40e-01 | 77.6% | 100.0% |
| 3955895 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.70 | 52.0 | 5.38e-01 | 81.0% | 85.5% |
| 3907977 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.69 | 48.0 | 5.23e-01 | 93.1% | 95.6% |
| 3845216 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.69 | 46.0 | 4.99e-01 | 81.0% | 88.9% |
| 5041606 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.66 | 50.0 | 4.86e-01 | 84.5% | 72.3% |
| 4940846 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.65 | 49.0 | 4.92e-01 | 79.3% | 91.5% |
| 3834267 | 376.1.4.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR | 0.62 | 36.0 | 3.01e-01 | 98.3% | 35.8% |
| 4544857 | 2007.2.5.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese, Rhodanese_C | 0.59 | 50.0 | 3.51e-01 | 100.0% | 43.9% |
| 3919938 | 2007.2.5.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese, Rhodanese_C | 0.58 | 43.0 | 3.14e-01 | 84.5% | 30.8% |
| 3907112 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.53 | 45.0 | 4.37e-01 | 96.6% | 100.0% |