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KF147891.1__AGS81933.1__PaBG_00049__00049

Bact-Vir

KF147891.1__AGS81933.1__PaBG_00049__00049

Identity

Accession:
KF147891 ↗
Kingdom:
phage

Quality

75.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-69
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4yjmC00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.68 59.0 5.36e-01 93.8% 98.8%
2mheA00 3.30.70.2400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF13773, DUF4170 0.66 56.0 5.37e-01 95.3% 83.8%
4e6zA01 3.40.1350.100 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.65 58.0 4.84e-01 100.0% 59.6%
1burS00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.64 54.0 4.44e-01 96.9% 56.9%
2zyrA02 2.60.40.2190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 43.0 3.84e-01 93.8% 47.9%
1pzxA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.64 49.0 3.96e-01 82.8% 77.0%
2cz4A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 56.0 4.84e-01 100.0% 92.9%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 55.0 5.07e-01 100.0% 100.0%
3hxiA01 3.30.760.10 Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e 0.62 49.0 3.68e-01 93.8% 33.3%
2jgbA01 3.30.760.10 Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e 0.62 51.0 3.81e-01 93.8% 35.8%
2byeA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 47.0 4.17e-01 100.0% 56.4%
5t0oA03 3.30.70.1320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain like 0.61 49.0 4.33e-01 93.8% 99.0%
2g7zA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.60 47.0 3.84e-01 85.9% 90.0%
4a18O00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.58 42.0 3.36e-01 78.1% 86.6%
4b6uA00 3.30.760.10 Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e 0.57 47.0 3.40e-01 95.3% 29.5%
1gtdA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.57 45.0 4.27e-01 92.2% 100.0%
2cyyA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.57 49.0 4.31e-01 96.9% 86.3%
1vbkA01 3.30.70.1510 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like 0.57 42.0 3.82e-01 82.8% 60.2%
1mwqA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.56 48.0 4.19e-01 98.4% 98.0%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.56 47.0 3.67e-01 98.4% 82.9%
2qz8A02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.56 47.0 4.38e-01 95.3% 98.8%
1wftA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 4.07e-01 100.0% 63.5%
3b49A00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.55 45.0 3.34e-01 98.4% 55.9%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 45.0 3.99e-01 95.3% 87.9%
2v50D07 3.30.70.1440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.55 45.0 4.05e-01 96.9% 93.7%
3gqcC04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.55 44.0 3.82e-01 100.0% 95.0%
2asyA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 45.0 3.95e-01 95.3% 87.1%
2pokA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 43.0 3.30e-01 92.2% 97.6%
3am2A02 2.60.120.1050 Mainly Beta › Sandwich › Jelly Rolls › 0.54 37.0 3.11e-01 95.3% 39.3%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 39.0 3.46e-01 95.3% 51.0%
1uenA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.47e-01 100.0% 45.6%
2hiyA01 3.30.70.1280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SP0830-like domains 0.54 43.0 3.98e-01 95.3% 90.9%
1o22A00 3.90.1000.10 Alpha Beta › Alpha-Beta Complex › Orphan Protein Tm0875; Chain: A; › Hypothetical protein TM0875 0.52 43.0 3.38e-01 95.3% 100.0%
1u8sA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 44.0 4.03e-01 98.4% 98.8%
5wm1A05 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.52 43.0 3.65e-01 100.0% 95.7%
2cuiA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.46e-01 98.4% 51.8%
3u6xS00 2.60.40.3320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.66e-01 93.8% 77.1%
1a6dA03 3.50.7.10 Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL 0.51 36.0 2.82e-01 75.0% 54.9%
2x10A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 42.0 3.29e-01 98.4% 38.9%
6jptA00 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 37.0 3.08e-01 79.7% 42.1%
1o59A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 42.0 3.19e-01 98.4% 52.0%
1b33N01 3.30.1490.170 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Allophycocyanin linker chain (domain) 0.51 40.0 4.23e-01 92.2% 100.0%
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.50 38.0 3.86e-01 95.3% 91.7%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.50 40.0 3.93e-01 96.9% 85.9%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3721982 304.14.1.0 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.74 63.0 5.48e-01 93.8% 98.9%
4022813 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.67 57.0 3.32e-01 96.9% 11.8%
3929041 221.1.1.69 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SNX17-27-31_F1_FERM 0.66 54.0 4.69e-01 98.4% 57.1%
1146593 304.14.1.2 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › DUF4170 0.66 56.0 5.37e-01 95.3% 83.8%
1178361 3397.1.1.0 a+b complex topology › Tic22 › Tic22 › Tic22 0.65 58.0 5.10e-01 100.0% 69.9%
3189659 2487.1.1.7 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.63 53.0 3.60e-01 96.9% 97.3%
4002825 11.1.1.958 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7652 0.63 48.0 4.26e-01 98.4% 56.8%
3795682 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 50.0 4.26e-01 100.0% 52.7%
4227341 317.1.1.1 a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E 0.62 51.0 3.70e-01 96.9% 45.9%
3612417 317.1.1.1 a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E 0.62 52.0 3.69e-01 96.9% 55.5%
4965210 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.61 52.0 5.37e-01 98.4% 100.0%
3931549 317.1.1.1 a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E 0.61 50.0 3.74e-01 93.8% 34.3%
4154375 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.61 48.0 3.57e-01 95.3% 33.3%
3307642 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.61 42.0 3.10e-01 73.4% 48.9%
5000967 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.60 52.0 4.52e-01 100.0% 90.5%
3457076 317.1.1.1 a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E 0.60 49.0 3.58e-01 93.8% 30.9%
222897 317.1.1.1 a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E 0.60 50.0 3.59e-01 95.3% 29.5%
3816810 7523.1.1.52 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_3, Lig_chan-Glu_bd 0.60 44.0 3.04e-01 79.7% 60.4%
5037431 304.4.1.1 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.59 50.0 4.75e-01 98.4% 97.5%
3451909 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.58 46.0 4.24e-01 87.5% 100.0%
3869382 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 46.0 3.77e-01 100.0% 44.6%
3683470 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.58 46.0 3.22e-01 90.6% 28.7%
3593924 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.58 51.0 4.17e-01 100.0% 54.2%
3941292 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.58 48.0 4.09e-01 100.0% 55.5%
3858396 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.57 43.0 3.60e-01 98.4% 44.0%
4572391 11.1.1.9 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.57 48.0 3.70e-01 98.4% 57.5%
3787525 871.1.1.1 a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 0.57 47.0 3.35e-01 98.4% 41.8%
5011383 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.57 47.0 4.88e-01 98.4% 100.0%
5016503 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.57 46.0 4.01e-01 96.9% 58.2%
3318082 11.1.1.872 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_ENGASE1_C 0.57 46.0 3.69e-01 100.0% 42.0%
3499689 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 48.0 4.26e-01 98.4% 69.5%
3180378 10.9.1.3 beta sandwiches › jelly-roll › C-terminal domain of mullusc hemocyanin › C-terminal domain of mullusc hemocyanin › Tyrosinase_C 0.56 48.0 3.74e-01 96.9% 57.9%
3657394 6108.1.1.11 alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Dynamin_N 0.56 46.0 2.68e-01 95.3% 37.5%
3623050 10.32.1.213 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 0.56 44.0 3.69e-01 95.3% 48.7%
4999285 886.1.1.2 a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like 0.56 46.0 3.37e-01 98.4% 54.8%
3665431 859.1.1.3 a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › ATG101 0.56 34.0 2.41e-01 76.6% 19.0%
4642338 807.1.1.1 a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD 0.55 42.0 4.53e-01 95.3% 100.0%
5006560 3115.5.1.2 a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PF27350 0.55 45.0 4.36e-01 98.4% 92.0%
5033281 304.100.1.1 a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS 0.54 43.0 4.29e-01 93.8% 96.9%
1002449 3662.1.1.1 a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC3 0.53 39.0 3.20e-01 79.7% 41.8%
3312666 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 39.0 3.82e-01 93.8% 72.9%
3509243 11.1.1.9 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.52 44.0 3.33e-01 96.9% 50.6%
3345725 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.52 43.0 2.94e-01 100.0% 97.5%
3484942 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.52 44.0 3.84e-01 100.0% 61.0%
3411299 10.32.1.180 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CEP104_N 0.52 43.0 3.15e-01 95.3% 32.0%
3492718 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 42.0 3.79e-01 96.9% 71.0%
3650200 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 43.0 3.41e-01 95.3% 43.6%
5053397 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.33e-01 98.4% 58.7%
3715275 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 3.53e-01 98.4% 53.9%
3855572 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.50 41.0 3.34e-01 96.9% 45.2%
3732370 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.50 40.0 4.10e-01 96.9% 96.7%
4942818 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.50 40.0 3.27e-01 95.3% 45.0%
5047332 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.50 41.0 3.89e-01 96.9% 85.0%