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KF183315.1__AHB80375.1__X__00015

Bact-Vir

KF183315.1__AHB80375.1__X__00015

Identity

Accession:
KF183315 ↗
Kingdom:
phage

Quality

85.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sozzivirus› Oenococcus_phage_phiS13

TaxID: 1432848

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 33-83
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2j6aA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.62 55.0 4.05e-01 100.0% 57.4%
3wfwA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 51.0 3.82e-01 100.0% 94.9%
1sdoA00 3.40.91.20 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.59 45.0 3.10e-01 86.3% 47.4%
7p2yd01 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.58 44.0 3.73e-01 90.2% 47.5%
2aj6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 41.0 3.19e-01 86.3% 33.3%
3mgdB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 38.0 2.82e-01 86.3% 24.3%
3f2bA05 6.10.50.10 Special › Helix non-globular › Insulin-like, subunit E › 0.52 38.0 3.99e-01 84.3% 85.4%
3h5aD01 3.90.930.70 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.51 40.0 3.55e-01 96.1% 94.3%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3442179 198.4.1.0 ↗ alpha arrays › Saposin-like › Enterocin 7A and 7B › Enterocin 7A and 7B 0.69 50.0 4.77e-01 82.4% 66.7%
4216527 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.62 48.0 3.80e-01 86.3% 41.8%
3839766 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 50.0 3.35e-01 96.1% 80.0%
4949225 2484.1.1.94 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HypF_C_2 0.60 51.0 3.05e-01 100.0% 47.1%
4024055 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 52.0 3.55e-01 98.0% 69.5%
4541110 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.60 45.0 2.97e-01 84.3% 18.0%
3963537 3435.1.1.1 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC 0.59 49.0 3.11e-01 100.0% 44.1%
3257536 813.1.1.2 ↗ a+b two layers › Chalcone isomerase › Chalcone isomerase › Chalcone isomerase › Chalcone_2 0.59 45.0 3.04e-01 86.3% 21.0%
3738730 632.13.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like 0.58 40.0 4.04e-01 76.5% 74.0%
3708907 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 44.0 3.20e-01 92.2% 36.2%
3370916 103.6.1.1 ↗ alpha arrays › RuvA-C › FGAM synthase PurL, linker domain › FGAM synthase PurL, linker domain › FGAR-AT_linker 0.58 41.0 3.82e-01 86.3% 60.0%
4666707 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.58 45.0 3.49e-01 86.3% 36.0%
4264669 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.56 44.0 3.11e-01 86.3% 25.7%
4085595 301.8.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS 0.55 47.0 3.46e-01 96.1% 48.1%
4032498 102.1.1.138 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_RecD2 0.55 38.0 3.63e-01 74.5% 78.3%
3588816 6056.1.1.2 ↗ alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.54 43.0 3.88e-01 88.2% 70.0%
D2 medium residues 161-262
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.59 35.0 3.67e-01 85.3% 64.4%
5hsqA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 41.0 3.79e-01 73.5% 84.5%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 42.0 4.13e-01 80.4% 99.1%
1ztuA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 41.0 3.55e-01 74.5% 72.2%
1fo0B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 43.0 4.18e-01 80.4% 82.1%
1x99A00 2.60.270.20 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin 0.55 39.0 3.49e-01 73.5% 98.6%
6g1yA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 37.0 3.57e-01 70.6% 87.5%
1nrkA01 3.30.70.1630 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 37.0 3.77e-01 71.6% 84.5%
5d2lE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.81e-01 76.5% 84.3%
3qjhA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.76e-01 75.5% 82.2%
4fgmA01 2.60.40.3650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 37.0 3.17e-01 75.5% 88.4%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.52 38.0 3.47e-01 95.1% 58.0%
2esvD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.82e-01 80.4% 82.6%
3sknA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.68e-01 76.5% 83.0%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4946510 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.62 45.0 4.46e-01 81.4% 72.4%
3839832 3799.1.1.1 ↗ alpha bundles › SabA N-terminal extracellular adhesion domain › SabA N-terminal extracellular adhesion domain › SabA N-terminal extracellular adhesion domain › SabA_adhesion 0.60 41.0 2.61e-01 70.6% 51.1%
5073557 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 40.0 3.56e-01 70.6% 84.3%
3392283 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.57 42.0 4.05e-01 76.5% 82.6%
5051015 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 39.0 3.34e-01 70.6% 74.8%
3738165 223.2.1.33 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.55 38.0 3.61e-01 71.6% 87.2%
3519046 223.2.1.33 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.53 37.0 3.57e-01 72.5% 93.3%
3254228 223.2.1.33 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.53 37.0 3.59e-01 72.5% 95.8%
4978955 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 36.0 3.36e-01 70.6% 90.8%
3919854 223.2.1.33 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.52 37.0 3.23e-01 73.5% 88.0%
3800869 223.2.1.15 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.50 41.0 3.38e-01 87.3% 89.4%