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KF188409.1__AGW43667.1__phiJB_00036__00036

Bact-Vir

KF188409.1__AGW43667.1__phiJB_00036__00036

Identity

Accession:
KF188409 ↗
Kingdom:
phage

Quality

73.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lactobacillus_phage_phiJB

TaxID: 1399941

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-71
PDB
Domain cluster: rep: MK448769.1__QBX19194.1__Javan471_0026__00033__D4-53
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hvfA00 3.40.5.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain 0.81 50.0 5.81e-01 74.6% 86.5%
2hjqA01 3.40.5.20 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain 0.71 45.0 5.19e-01 71.8% 97.8%
2xxpA02 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.59 47.0 3.27e-01 90.1% 49.1%
2mzsA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 40.0 3.69e-01 73.2% 80.8%
2cyyA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.58 40.0 3.68e-01 73.2% 77.9%
2kt2A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 38.0 3.87e-01 70.4% 100.0%
2akkA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 38.0 3.79e-01 73.2% 79.7%
1y7xA01 2.30.30.550 Mainly Beta › Roll › SH3 type barrels. › Major Vault Protein repeat 0.54 32.0 3.77e-01 71.8% 89.4%
2mgzA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 37.0 3.46e-01 71.8% 81.9%
2y8yA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.53 36.0 3.19e-01 71.8% 95.7%
1bdyA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 36.0 3.08e-01 71.8% 95.9%
2qr4A02 1.10.287.830 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like 0.52 33.0 3.73e-01 76.1% 97.9%
3hkoA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 39.0 2.83e-01 87.3% 98.2%
4ofqA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 38.0 3.08e-01 85.9% 54.2%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031645 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.88 60.0 7.08e-01 71.8% 100.0%
4956454 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.81 52.0 5.79e-01 73.2% 83.6%
5024995 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.80 54.0 6.15e-01 73.2% 92.5%
5033467 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.76 49.0 5.85e-01 70.4% 97.9%
4565290 4076.3.1.6 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › GINS_N 0.76 52.0 4.93e-01 71.8% 83.5%
1346119 4076.4.1.1 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C 0.76 49.0 5.60e-01 71.8% 92.2%
5083883 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.75 46.0 5.50e-01 71.8% 97.8%
3595897 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.73 44.0 4.90e-01 71.8% 78.2%
3266009 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.72 43.0 4.83e-01 71.8% 78.2%
5009 4076.3.1.2 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › YqbF 0.71 45.0 5.11e-01 71.8% 91.8%
3703797 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.71 44.0 4.94e-01 71.8% 81.8%
3251095 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.70 44.0 4.71e-01 71.8% 75.0%
3705471 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.70 44.0 4.86e-01 71.8% 81.8%
3593781 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.69 45.0 4.99e-01 71.8% 85.5%
4003015 4.1.1.318 ↗ beta barrels › SH3 › SH3 › SH3 › PF26085 0.64 44.0 4.75e-01 70.4% 96.6%
5023430 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.64 44.0 4.67e-01 71.8% 85.0%
4105022 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.63 43.0 4.08e-01 71.8% 81.1%
4932421 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 35.0 4.18e-01 74.6% 82.0%
4960540 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 42.0 4.40e-01 71.8% 92.3%
3475881 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 43.0 4.41e-01 74.6% 77.1%
3445679 375.1.1.51 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 0.60 34.0 4.01e-01 73.2% 83.3%
4969104 304.12.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.58 40.0 3.78e-01 70.4% 97.6%
3279154 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.57 39.0 3.60e-01 73.2% 75.0%
5051424 304.4.1.3 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII 0.55 37.0 3.48e-01 71.8% 91.6%