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KF188410.1__AGW43722.1__phiLdb_00045__00045

Bact-Vir

KF188410.1__AGW43722.1__phiLdb_00045__00045

Identity

Accession:
KF188410 ↗
Kingdom:
phage

Quality

84.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-51
PDB
Domain cluster: representative
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a2cA03 1.20.1440.340 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.87 76.0 5.34e-01 98.0% 33.3%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.86 63.0 5.40e-01 100.0% 50.0%
3ibpA01 1.20.58.850 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.83 75.0 6.57e-01 100.0% 88.9%
3ehfB01 6.10.250.2870 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.81 74.0 5.67e-01 100.0% 54.8%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.81 72.0 6.75e-01 100.0% 86.7%
6n7pX01 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.81 67.0 4.09e-01 100.0% 15.4%
6r1nA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.80 72.0 5.59e-01 100.0% 65.0%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 73.0 5.24e-01 100.0% 39.1%
3fd9A03 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.79 71.0 6.21e-01 100.0% 67.1%
3n5lA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 71.0 6.79e-01 100.0% 86.0%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.79 67.0 5.71e-01 100.0% 59.0%
3onjA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.79 70.0 5.59e-01 100.0% 50.5%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.79 70.0 4.67e-01 100.0% 48.1%
1i4dA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.78 68.0 4.56e-01 100.0% 35.1%
2bduA02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.78 69.0 6.02e-01 100.0% 66.2%
4n06A02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.78 70.0 4.31e-01 98.0% 54.2%
2xokP00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.76 63.0 5.57e-01 100.0% 62.2%
2ch7A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.76 67.0 4.08e-01 100.0% 28.2%
1vx7301 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.76 68.0 5.88e-01 100.0% 67.6%
2qffA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.76 58.0 5.14e-01 100.0% 56.8%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.75 65.0 6.04e-01 100.0% 87.5%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.74 66.0 5.96e-01 98.0% 73.8%
6vq6G02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.74 65.0 4.37e-01 100.0% 93.5%
1fs0G02 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.74 63.0 5.28e-01 100.0% 59.6%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 65.0 5.09e-01 100.0% 57.7%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 65.0 5.70e-01 100.0% 67.1%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 64.0 5.42e-01 100.0% 60.5%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.73 62.0 5.83e-01 100.0% 85.2%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.72 62.0 5.41e-01 100.0% 67.5%
6t0bc01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 62.0 5.35e-01 100.0% 62.8%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 61.0 5.43e-01 100.0% 82.2%
1qdbA02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.71 62.0 4.47e-01 100.0% 41.3%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.71 57.0 5.04e-01 100.0% 61.6%
1xl3C00 1.20.1280.80 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.70 58.0 4.83e-01 100.0% 52.7%
1vibA00 1.10.287.120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Neurotoxin B-IV-like 0.69 53.0 5.23e-01 100.0% 81.8%
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.69 57.0 5.40e-01 100.0% 79.4%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.68 56.0 4.97e-01 100.0% 97.4%
4hz4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.68 54.0 4.28e-01 100.0% 41.1%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.68 55.0 4.87e-01 100.0% 62.3%
2wdqD00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.68 58.0 4.60e-01 100.0% 47.6%
1kfdA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.67 54.0 4.91e-01 100.0% 66.2%
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.67 59.0 4.89e-01 100.0% 63.2%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.67 55.0 5.05e-01 100.0% 69.0%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.67 54.0 5.21e-01 100.0% 82.8%
4fjvA02 1.20.1300.20 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 0.67 53.0 3.90e-01 95.9% 31.9%
1jalA03 1.10.150.300 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain 0.66 55.0 4.72e-01 98.0% 58.0%
1x0tA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.65 51.0 4.86e-01 91.8% 73.8%
1ku9A02 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.65 56.0 5.19e-01 100.0% 81.2%
1oe8A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.65 53.0 4.13e-01 100.0% 41.1%
3rrkA02 1.20.1460.20 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › 0.65 52.0 3.84e-01 100.0% 50.3%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.65 52.0 4.22e-01 100.0% 68.8%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.65 54.0 4.38e-01 100.0% 48.0%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.64 54.0 4.37e-01 100.0% 48.1%
2b5dX01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.64 51.0 3.08e-01 100.0% 12.1%
4lunU00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.63 54.0 3.34e-01 100.0% 16.4%
3sjqC00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 52.0 4.59e-01 100.0% 62.5%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.62 49.0 3.82e-01 100.0% 100.0%
3nrxA00 1.20.58.1520 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 50.0 3.91e-01 100.0% 39.8%
2b3tB01 6.10.140.1980 Special › Helix non-globular › Helix Hairpins › 0.59 52.0 4.77e-01 100.0% 78.5%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3770414 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.86 78.0 5.96e-01 100.0% 46.7%
3930836 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.84 78.0 5.68e-01 100.0% 40.8%
3542312 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.83 75.0 5.06e-01 100.0% 29.7%
3229748 1134.1.1.9 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › RSLD_CPSF6 0.82 75.0 6.08e-01 98.0% 56.5%
4225190 4207.1.2.29 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › Med4 0.81 72.0 5.16e-01 100.0% 36.3%
3574981 604.12.1.91 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › RSLD_CPSF6 0.81 73.0 6.37e-01 98.0% 68.6%
3705834 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.80 73.0 5.00e-01 100.0% 34.2%
4009690 7523.1.1.25 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Phosphonate-bd 0.80 73.0 4.75e-01 100.0% 25.1%
3889971 109.4.1.1643 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RSLD_CPSF6 0.80 72.0 5.41e-01 98.0% 43.6%
3773905 604.3.1.33 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › RSLD_CPSF6 0.80 71.0 6.03e-01 95.9% 62.7%
5053017 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.79 71.0 5.02e-01 100.0% 35.0%
149872 3291.1.1.1 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.78 65.0 5.46e-01 89.8% 100.0%
3619500 304.48.1.4 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc 0.78 69.0 4.17e-01 100.0% 16.2%
4494085 192.4.1.1 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.78 70.0 5.90e-01 100.0% 61.3%
3502550 4207.1.2.60 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › CHDCT2 0.78 70.0 5.68e-01 100.0% 54.4%
3231045 101.1.1.117 alpha arrays › HTH › HTH › Three-helical HTH › CHDCT2 0.78 70.0 5.38e-01 100.0% 46.7%
3541678 101.1.1.117 alpha arrays › HTH › HTH › Three-helical HTH › CHDCT2 0.78 70.0 5.54e-01 100.0% 51.6%
3617959 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.77 68.0 5.36e-01 100.0% 47.6%
3924801 109.4.1.1643 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RSLD_CPSF6 0.77 69.0 5.43e-01 98.0% 50.5%
3181110 5086.1.1.110 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HisKA 0.77 68.0 5.47e-01 100.0% 51.6%
3693258 604.7.1.1 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.77 68.0 5.20e-01 100.0% 44.5%
3377481 3846.1.1.0 alpha bundles › IcmR › IcmR › IcmR 0.76 67.0 6.32e-01 100.0% 81.7%
4666408 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.75 67.0 5.44e-01 100.0% 54.4%
3336964 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.75 66.0 4.15e-01 100.0% 19.6%
4937604 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.75 67.0 5.02e-01 100.0% 42.6%
3711237 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.75 65.0 5.59e-01 100.0% 61.3%
3509923 6103.1.1.0 alpha bundles › Death domain-associated protein 6 histone binding domain › Death domain-associated protein 6 histone binding domain › Death domain-associated protein 6 histone binding domain 0.75 65.0 4.37e-01 100.0% 26.5%
3944240 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.74 65.0 5.31e-01 100.0% 54.4%
3414772 2004.1.1.184 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.73 65.0 3.75e-01 100.0% 11.8%
3298167 5086.1.1.62 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › XH 0.73 65.0 4.64e-01 100.0% 35.7%
3687766 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.73 65.0 4.15e-01 100.0% 21.8%
3417475 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.73 64.0 3.74e-01 100.0% 12.0%
4392833 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.73 64.0 4.18e-01 100.0% 58.6%
4396574 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.73 63.0 4.39e-01 100.0% 29.9%
3839497 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.73 60.0 5.07e-01 95.9% 92.9%
4879730 5001.1.1.3 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 0.72 63.0 5.71e-01 100.0% 77.6%
3664570 5069.1.3.53 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › CASP_dom 0.70 61.0 4.88e-01 100.0% 54.0%
4176312 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.70 60.0 4.84e-01 100.0% 52.0%
3535346 2004.1.1.184 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.70 54.0 3.17e-01 100.0% 9.9%
3651880 192.8.1.401 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › BPS1 0.69 58.0 4.88e-01 100.0% 54.4%
3794577 3331.1.1.14 a+b two layers › Uncharacterized protein yibL › Uncharacterized protein yibL › Uncharacterized protein yibL › CHDCT2 0.69 59.0 4.98e-01 100.0% 57.6%
5039854 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.66 54.0 4.84e-01 100.0% 66.7%
3864353 109.4.1.316 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HDS,Sec7-like_HUS,DCB 0.65 55.0 2.97e-01 100.0% 18.6%
3542369 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.65 54.0 3.19e-01 100.0% 11.5%
3318544 150.1.1.78 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rx_N 0.64 50.0 4.52e-01 100.0% 61.3%
4943086 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.59 47.0 4.35e-01 100.0% 70.0%