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KF188414.1__AGR48850.1__PBI_ABCAT_10__00010

Bact-Vir

KF188414.1__AGR48850.1__PBI_ABCAT_10__00010

Identity

Accession:
KF188414 ↗
Kingdom:
phage

Quality

76.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 17-29_115-188
PDB
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kdrA02 3.40.140.120 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › 0.76 47.0 4.11e-01 75.9% 42.5%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 41.0 3.97e-01 77.0% 55.0%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 46.0 4.97e-01 77.0% 88.9%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 41.0 4.69e-01 89.7% 90.3%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 38.0 4.48e-01 89.7% 91.1%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 42.0 4.50e-01 89.7% 88.9%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 35.0 4.00e-01 77.0% 81.5%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 42.0 3.46e-01 77.0% 76.8%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 3.60e-01 79.3% 50.0%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.57 43.0 4.06e-01 87.4% 67.3%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 41.0 4.48e-01 90.8% 98.5%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 45.0 4.26e-01 92.0% 88.9%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 44.0 4.69e-01 98.9% 100.0%
1k5dB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 3.98e-01 96.6% 80.8%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 38.0 4.16e-01 92.0% 95.5%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 32.0 3.61e-01 77.0% 82.0%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 38.0 4.13e-01 90.8% 95.6%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 38.0 4.06e-01 98.9% 88.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 34.0 3.70e-01 77.0% 82.6%
4mypA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.79e-01 89.7% 96.7%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.92e-01 88.5% 91.3%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.51 40.0 3.90e-01 89.7% 90.4%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 37.0 3.96e-01 98.9% 93.2%
4ydzA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 37.0 3.30e-01 79.3% 80.0%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4034031 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.92 67.0 7.75e-01 79.3% 100.0%
3942998 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.86 66.0 7.31e-01 86.2% 100.0%
4031151 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.84 68.0 7.27e-01 87.4% 98.7%
5082482 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.81 65.0 7.01e-01 85.1% 97.3%
3949049 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.80 68.0 7.00e-01 96.6% 95.2%
5039293 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.75 61.0 6.51e-01 85.1% 100.0%
3964370 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.72 59.0 6.02e-01 90.8% 90.6%
3185321 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.61 44.0 4.67e-01 90.8% 88.0%
3457163 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.61 40.0 4.18e-01 78.2% 72.5%
3645842 4.1.1.162 beta barrels › SH3 › SH3 › SH3 › DUF502 0.61 44.0 4.53e-01 88.5% 82.5%
3715264 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 49.0 4.45e-01 89.7% 89.2%
3214234 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 40.0 4.61e-01 73.6% 100.0%
3437797 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.58 48.0 3.47e-01 90.8% 80.4%
3732226 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 47.0 3.94e-01 93.1% 90.6%
3879132 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 40.0 4.28e-01 93.1% 86.7%
3188394 4.8.1.22 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.57 42.0 3.80e-01 78.2% 69.2%
4997059 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.57 39.0 4.12e-01 77.0% 81.3%
4013811 4.8.1.22 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.57 42.0 4.19e-01 78.2% 83.3%
3681742 220.1.1.182 beta barrels › PH domain-like › PH domain-like › PH domain-like › RDR6_2nd 0.57 46.0 3.73e-01 88.5% 81.8%
157323 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 41.0 4.48e-01 90.8% 98.5%
3344404 220.1.1.182 beta barrels › PH domain-like › PH domain-like › PH domain-like › RDR6_2nd 0.56 45.0 3.64e-01 88.5% 78.3%
4946993 4.1.1.479 beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.56 36.0 3.93e-01 77.0% 81.4%
3561094 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 41.0 4.36e-01 89.7% 92.0%
5016827 5090.1.1.11 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S_layer_N 0.55 40.0 3.65e-01 77.0% 81.5%
3607307 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 39.0 4.25e-01 93.1% 94.3%
3511260 9.11.1.0 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.55 46.0 3.69e-01 97.7% 92.6%
3787626 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.54 41.0 3.76e-01 83.9% 61.7%
3829476 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.54 42.0 3.40e-01 85.1% 89.1%
3616263 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 34.0 3.26e-01 82.8% 57.0%
4931072 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.52 33.0 3.62e-01 77.0% 80.0%
3642001 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.52 37.0 4.00e-01 79.3% 92.9%
4954224 4.1.1.182 beta barrels › SH3 › SH3 › SH3 › DUF2097 0.52 39.0 3.82e-01 90.8% 75.8%
3782947 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 38.0 3.46e-01 79.3% 63.3%
5054896 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 31.0 2.97e-01 87.4% 51.0%
2701957 6023.1.1.1 beta barrels › Restriction endonuclease PabI › Restriction endonuclease PabI › Restriction endonuclease PabI › RE_R_Pab1 0.51 36.0 2.71e-01 74.7% 80.3%
4022025 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.51 41.0 3.54e-01 90.8% 88.3%
3501196 2498.1.1.14 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.51 42.0 2.71e-01 94.3% 28.3%
D2 medium residues 222-272
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04860.18 best Phage_portal 40.2 3.30e-10 100.0% 15.6%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kdrA03 3.30.1120.70 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.64 50.0 5.06e-01 90.2% 90.0%
3bdlA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 48.0 3.35e-01 82.4% 72.3%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4410228 4038.1.1.1 alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal 0.84 77.0 4.66e-01 98.0% 19.3%
3943006 4038.1.1.1 alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal 0.79 71.0 4.35e-01 100.0% 18.3%
4032886 4038.1.1.1 alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal 0.67 55.0 3.62e-01 100.0% 19.6%
3339374 5089.1.1.2 beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › MACPF 0.58 48.0 3.06e-01 100.0% 24.7%
3709329 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.50 37.0 3.09e-01 90.2% 87.8%
D3 medium residues 354-392
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 56.0 5.43e-01 82.1% 72.7%
2ja2A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.74 49.0 4.40e-01 76.9% 50.0%
4me9B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.74 53.0 3.35e-01 76.9% 46.8%
4dccA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.69 52.0 4.34e-01 87.2% 58.1%
2imgA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.65 47.0 3.20e-01 76.9% 28.2%
5t3wA00 1.20.120.1160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.65 54.0 3.80e-01 100.0% 73.0%
2w48B01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 46.0 4.31e-01 82.1% 63.5%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 4.30e-01 100.0% 54.0%
4ex8A00 3.40.1790.10 Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain 0.62 42.0 2.54e-01 71.8% 9.3%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 3.83e-01 79.5% 49.2%
2px7A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.58 42.0 2.69e-01 76.9% 36.0%
1umqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 41.0 3.75e-01 84.6% 55.0%
3w3sA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 38.0 2.29e-01 74.4% 8.4%
2dn0A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 39.0 3.34e-01 79.5% 46.1%
1k6yA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.56 45.0 4.39e-01 100.0% 100.0%
2id3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.55 43.0 4.12e-01 92.3% 83.7%
3dewA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 39.0 3.72e-01 92.3% 78.8%
3oymA01 1.10.340.70 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.51 41.0 3.28e-01 100.0% 60.2%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3590909 4038.1.1.1 alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal 0.97 84.0 4.87e-01 92.3% 13.3%
5012367 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 70.0 6.11e-01 87.2% 60.0%
3943006 4038.1.1.1 alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal 0.88 75.0 4.41e-01 100.0% 12.8%
5049179 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 60.0 5.17e-01 76.9% 50.0%
4263447 3801.1.1.4 extended segments › ParE2-associated antitoxin 2 (PaaA2) › ParE2-associated antitoxin 2 (PaaA2) › ParE2-associated antitoxin 2 (PaaA2) › UPF0175 0.82 60.0 5.76e-01 79.5% 68.9%
3469752 101.1.1.35 alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq 0.82 59.0 5.64e-01 76.9% 68.9%
3877765 101.1.1.35 alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq 0.81 62.0 6.17e-01 82.1% 80.0%
4965520 101.1.1.556 alpha arrays › HTH › HTH › Three-helical HTH › DUF7317 0.80 64.0 5.74e-01 89.7% 94.5%
4937291 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.76 64.0 6.09e-01 92.3% 97.8%
5071071 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 67.0 5.49e-01 100.0% 71.4%
5061082 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 57.0 5.74e-01 79.5% 77.5%
4460997 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.73 50.0 4.82e-01 71.8% 64.4%
3984767 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 55.0 4.83e-01 84.6% 56.7%
3926525 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.70 50.0 5.05e-01 79.5% 80.0%
5051712 101.1.4.90 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_23 0.70 51.0 4.72e-01 84.6% 60.0%
4583223 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.69 51.0 4.62e-01 82.1% 60.0%
3401087 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.68 49.0 4.65e-01 82.1% 64.0%
4998812 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.67 42.0 3.60e-01 100.0% 33.8%
3943148 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.66 49.0 4.56e-01 82.1% 66.0%
3412711 101.1.1.35 alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq 0.66 52.0 4.08e-01 89.7% 74.1%
3953011 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.65 46.0 4.24e-01 79.5% 58.2%
3590753 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 46.0 4.43e-01 82.1% 64.0%
3781211 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 52.0 3.83e-01 94.9% 52.4%
3720852 101.1.1.247 alpha arrays › HTH › HTH › Three-helical HTH › zf-H2C2 0.57 48.0 3.88e-01 94.9% 69.3%
3324409 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.56 42.0 3.88e-01 84.6% 81.8%
4967647 310.1.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain 0.56 49.0 3.80e-01 100.0% 53.3%
4208975 2005.1.1.25 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › HIGH_NTase1 0.55 45.0 2.64e-01 97.4% 12.1%
865123 101.1.1.76 alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.52 40.0 3.06e-01 94.9% 49.5%