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KF301602.1__AGS80902.1__X__00017

Bact-Vir

KF301602.1__AGS80902.1__X__00017

Identity

Accession:
KF301602 ↗
Kingdom:
phage

Quality

87.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-54
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nrwA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.84 60.0 4.38e-01 75.9% 30.8%
4ixjA01 3.30.1300.80 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.83 66.0 5.83e-01 85.2% 63.6%
1n5uA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.83 69.0 5.45e-01 88.9% 46.6%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.83 59.0 4.74e-01 79.6% 41.2%
1kxpD03 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.82 61.0 5.17e-01 83.3% 48.9%
3mvpA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.82 73.0 5.28e-01 100.0% 36.9%
2qvwA04 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.81 71.0 5.19e-01 100.0% 40.0%
3b0cW00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.81 66.0 5.96e-01 90.7% 65.8%
4evxA00 1.10.1740.240 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.80 68.0 5.54e-01 98.1% 51.5%
1wgfA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.80 56.0 5.66e-01 79.6% 75.5%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.79 66.0 4.78e-01 96.3% 33.6%
5j1hA01 1.20.58.1060 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 54.0 3.61e-01 70.4% 23.6%
3rv0C02 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.79 70.0 5.11e-01 100.0% 49.3%
1whuA00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.78 67.0 5.51e-01 100.0% 53.8%
4didB01 1.20.58.450 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cell division control protein 42 homolog 0.78 68.0 5.38e-01 100.0% 47.4%
1fcqA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.78 68.0 4.18e-01 98.1% 18.5%
3ermB00 1.10.10.710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like 0.77 63.0 6.01e-01 92.6% 89.1%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.75 50.0 4.89e-01 74.1% 63.8%
3triA02 1.10.3730.10 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like 0.75 64.0 5.20e-01 100.0% 50.5%
1ad6A00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.74 64.0 4.43e-01 98.1% 28.6%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 50.0 4.01e-01 70.4% 53.1%
1z8sA02 6.10.140.360 Special › Helix non-globular › Helix Hairpins › 0.72 37.0 4.19e-01 72.2% 64.3%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 54.0 5.27e-01 81.5% 84.5%
1w9cA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.70 54.0 3.33e-01 85.2% 16.2%
3g36B00 1.20.890.10 Mainly Alpha › Up-down Bundle › cAMP-dependent Protein Kinase, Chain A › cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain 0.68 50.0 5.09e-01 81.5% 98.0%
1kl7A02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.68 60.0 3.78e-01 96.3% 37.8%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 50.0 4.13e-01 79.6% 47.9%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.67 58.0 3.68e-01 98.1% 26.2%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.64 50.0 4.68e-01 83.3% 69.7%
3l5kA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 43.0 4.06e-01 77.8% 55.9%
1cm0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 48.0 3.46e-01 83.3% 57.4%
1dt9A01 3.30.960.10 Alpha Beta › 2-Layer Sandwich › Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A › eRF1 domain 1 0.63 47.0 3.81e-01 87.0% 41.9%
2x43S00 6.10.140.1430 Special › Helix non-globular › Helix Hairpins › 0.61 47.0 4.47e-01 88.9% 73.1%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 47.0 4.25e-01 96.3% 62.7%
2qvaA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.60 43.0 4.33e-01 75.9% 81.1%
3k6hA01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.59 51.0 3.64e-01 98.1% 59.3%
7px0A01 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.59 51.0 3.98e-01 98.1% 63.3%
3tixB03 3.40.50.11490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 40.0 3.05e-01 81.5% 27.5%
3a7rA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 45.0 2.97e-01 87.0% 75.8%
4fcgA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.56 44.0 2.84e-01 90.7% 42.6%
3tjmA02 1.10.1470.20 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 0.55 42.0 3.73e-01 88.9% 80.0%
1dd3A01 1.20.5.710 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Single helix bin 0.55 40.0 3.96e-01 79.6% 73.7%
3rbtA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 42.0 3.40e-01 90.7% 41.0%
3p2mA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 36.0 2.39e-01 77.8% 22.8%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4600245 3640.1.1.1 alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Spidroin_MaSp 0.96 83.0 7.11e-01 90.7% 62.0%
3235805 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.93 66.0 7.45e-01 74.1% 100.0%
5022532 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.91 78.0 6.88e-01 90.7% 69.3%
4091240 131.1.1.37 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD, HDOD, HD_assoc 0.91 70.0 4.08e-01 81.5% 11.7%
5016525 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.89 61.0 5.30e-01 72.2% 48.8%
3942487 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.88 77.0 5.83e-01 100.0% 43.3%
4547252 194.1.1.1 alpha complex topology › Serum albumin-like › Serum albumin-like › Serum albumin-like › Serum_albumin 0.88 70.0 4.72e-01 85.2% 25.6%
3970206 857.1.1.0 a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like 0.88 74.0 6.90e-01 92.6% 75.4%
3588902 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.88 72.0 5.21e-01 92.6% 34.3%
3248213 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.87 70.0 4.35e-01 85.2% 17.7%
4061431 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.85 61.0 6.36e-01 83.3% 82.0%
3714100 181.1.1.0 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.85 63.0 5.79e-01 81.5% 61.4%
3376780 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.85 54.0 4.52e-01 70.4% 41.2%
3809576 103.4.1.5 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 0.85 71.0 6.72e-01 96.3% 76.9%
3270646 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.85 76.0 4.91e-01 100.0% 23.4%
5070097 4070.1.1.2 alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.84 76.0 4.85e-01 100.0% 62.1%
4361615 5067.1.1.2 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF 0.83 72.0 4.70e-01 96.3% 23.7%
3284564 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.83 72.0 5.35e-01 100.0% 39.6%
5048048 4957.1.1.9 a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit › HAAS 0.82 69.0 6.13e-01 90.7% 66.7%
3648830 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.80 66.0 5.68e-01 96.3% 57.6%
5084048 3831.1.1.15 alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › HAAS 0.80 68.0 5.73e-01 90.7% 58.8%
4339297 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.80 72.0 4.81e-01 98.1% 40.5%
3426642 375.1.1.96 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › YABBY 0.80 63.0 6.53e-01 90.7% 90.0%
3239718 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 51.0 4.82e-01 85.2% 55.4%
4034454 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.79 70.0 5.29e-01 98.1% 44.0%
3970007 3502.1.1.0 alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein 0.79 66.0 5.90e-01 92.6% 76.0%
3503648 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.78 60.0 5.85e-01 87.0% 75.0%
4017461 3860.1.1.0 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.78 60.0 4.94e-01 85.2% 46.0%
3692017 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.78 53.0 3.79e-01 70.4% 30.7%
4980598 140.1.1.0 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.78 69.0 4.56e-01 100.0% 57.3%
3685507 109.2.1.39 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Ldi 0.77 65.0 3.79e-01 90.7% 67.8%
185221 3502.1.1.1 alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG 0.77 65.0 6.03e-01 92.6% 85.1%
3483536 5059.1.1.0 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.77 61.0 4.70e-01 87.0% 40.8%
4271175 101.1.2.498 alpha arrays › HTH › HTH › winged helix domain › PF25870 0.77 55.0 4.04e-01 79.6% 30.4%
4858006 191.1.1.11 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_7 0.76 66.0 5.94e-01 100.0% 88.3%
3243101 6026.1.1.0 alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain 0.74 63.0 4.92e-01 98.1% 44.3%
3518379 3502.1.1.1 alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG 0.74 58.0 5.84e-01 88.9% 87.3%
4517192 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.73 65.0 4.44e-01 100.0% 87.4%
3925598 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.72 61.0 4.28e-01 96.3% 88.0%
4054903 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.72 60.0 3.34e-01 94.4% 6.4%
3370653 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.72 51.0 5.07e-01 77.8% 74.5%
3350634 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.72 63.0 3.99e-01 100.0% 50.7%
3870636 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 54.0 5.02e-01 79.6% 66.2%
3402349 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.70 50.0 4.87e-01 79.6% 68.3%
4232288 4275.1.1.10 alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › NifW 0.70 54.0 4.97e-01 87.0% 64.3%
3839206 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.70 56.0 5.00e-01 90.7% 62.5%
4516639 103.1.1.6 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.67 47.0 4.50e-01 79.6% 63.5%
5030654 5073.1.1.11 alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Cation_ATPase_C 0.66 58.0 3.33e-01 100.0% 44.3%
3231065 188.1.1.1 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.65 54.0 3.63e-01 100.0% 43.3%
3222769 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.65 55.0 3.29e-01 90.7% 48.8%
4978129 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.64 53.0 3.16e-01 92.6% 20.7%
3550406 541.1.1.0 alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit 0.63 46.0 4.74e-01 85.2% 90.0%
3289153 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 48.0 3.00e-01 85.2% 62.0%
3461932 3922.1.1.189 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DUF630 0.59 50.0 4.03e-01 88.9% 100.0%