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KF301602.1__AGS80948.1__X__00063

Bact-Vir

KF301602.1__AGS80948.1__X__00063

Identity

Accession:
KF301602 ↗
Kingdom:
phage

Quality

88.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-77_164-185
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 28.0 3.21e-01 75.6% 59.1%
3rd7A00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.57 44.0 3.09e-01 81.1% 50.5%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 28.0 3.02e-01 75.6% 51.4%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5057515 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.60 34.0 4.06e-01 88.9% 83.3%
3822639 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.56 49.0 3.30e-01 96.7% 92.6%
3710325 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 35.0 3.77e-01 86.7% 73.8%
5011694 210.1.4.1 a+b four layers › Ntn/PP2C › Ntn › (Glycosyl)asparaginase › Asparaginase_2 0.55 44.0 3.25e-01 90.0% 67.0%
3615126 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 41.0 3.34e-01 81.1% 65.5%
4014162 4018.1.1.0 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases 0.52 43.0 3.31e-01 91.1% 58.1%
4499259 247.1.1.0 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.50 44.0 3.49e-01 96.7% 51.4%
D2 high residues 80-160
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fo8D02 2.40.10.380 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.80 74.0 7.14e-01 100.0% 97.8%
1wfjA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.68 60.0 5.27e-01 100.0% 92.7%
3t05A02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.61 51.0 4.85e-01 91.4% 88.7%
3butA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 49.0 4.31e-01 92.6% 80.8%
1uwwB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 51.0 4.07e-01 100.0% 60.3%
2gkpA00 3.40.1590.10 Alpha Beta › 3-Layer(aba) Sandwich › NMB0488-like fold › NMB0488-like 0.59 45.0 3.60e-01 81.5% 77.3%
2b5iB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 51.0 4.94e-01 98.8% 86.2%
4d0qA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 49.0 4.06e-01 100.0% 50.3%
2b3rA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.57 48.0 4.31e-01 100.0% 78.2%
2h6oA02 2.60.40.2810 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 48.0 4.03e-01 100.0% 81.3%
4rkiA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.57 41.0 3.51e-01 75.3% 76.9%
1vemA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 48.0 4.57e-01 98.8% 92.0%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 47.0 4.71e-01 100.0% 91.8%
1j4sA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.56 38.0 3.17e-01 71.6% 51.7%
3aapA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 40.0 3.52e-01 76.5% 99.2%
7clyA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.55 46.0 3.77e-01 100.0% 94.9%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 48.0 4.48e-01 100.0% 95.1%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 46.0 4.48e-01 100.0% 97.9%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.54 36.0 3.94e-01 81.5% 90.3%
4fcaA01 2.60.120.1250 Mainly Beta › Sandwich › Jelly Rolls › Peptidase M60, enhancin-like domain 1 0.54 41.0 3.82e-01 97.5% 63.3%
2lgnA00 2.60.40.2850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 36.0 3.83e-01 88.9% 83.3%
1c3kA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.53 36.0 3.09e-01 71.6% 53.8%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 36.0 2.82e-01 86.4% 29.1%
6ea2A04 2.60.40.1840 Mainly Beta › Sandwich › Immunoglobulin-like › Aminopeptidase N, middle-beta domain 0.53 43.0 4.18e-01 93.8% 89.6%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.51e-01 100.0% 66.8%
3ll3B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 40.0 2.94e-01 86.4% 88.6%
7nitA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.94e-01 97.5% 83.5%
1g0uE00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 39.0 2.93e-01 84.0% 81.3%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 38.0 3.45e-01 79.0% 76.1%
3cwvA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.51 41.0 3.14e-01 88.9% 43.4%
4bfeC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.80e-01 88.9% 83.0%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.51 42.0 3.85e-01 100.0% 73.2%
1aj6A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.51 41.0 3.12e-01 87.7% 46.9%
2zylA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.51 40.0 3.07e-01 90.1% 68.7%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3705348 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.70 62.0 5.40e-01 100.0% 95.2%
3267585 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 55.0 5.81e-01 93.8% 100.0%
3827980 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.66 58.0 4.22e-01 100.0% 54.9%
3715218 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.64 56.0 4.55e-01 100.0% 81.9%
3771405 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 56.0 4.47e-01 100.0% 49.7%
3513303 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 55.0 5.06e-01 100.0% 86.4%
4991092 3370.1.1.0 beta sandwiches › Lactococcin 972 › Lactococcin 972 › Lactococcin 972 0.63 45.0 4.53e-01 88.9% 75.0%
5000763 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 46.0 4.49e-01 77.8% 90.0%
5060477 11.1.1.1410 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CarboxypepD_reg 0.62 48.0 4.95e-01 98.8% 89.3%
4930836 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 54.0 5.06e-01 97.5% 82.0%
4883586 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 47.0 4.62e-01 80.2% 81.4%
3513324 11.1.1.260 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG_2 0.61 53.0 4.99e-01 100.0% 81.0%
3935903 11.1.1.260 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG_2 0.61 53.0 4.99e-01 100.0% 85.0%
3714985 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 45.0 4.84e-01 81.5% 94.2%
3567758 10.32.1.7 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › XRCC1_N 0.61 53.0 4.39e-01 100.0% 64.0%
3551607 11.1.1.283 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL2RB_N1 0.60 53.0 4.91e-01 98.8% 82.9%
4125814 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.60 44.0 4.54e-01 82.7% 85.3%
4981986 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 51.0 4.99e-01 97.5% 88.9%
3395726 11.1.1.260 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG_2 0.59 52.0 4.89e-01 100.0% 83.0%
4940470 10.10.1.0 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.59 50.0 4.91e-01 100.0% 87.8%
3417047 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.59 43.0 4.63e-01 77.8% 100.0%
1688248 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.59 47.0 4.80e-01 100.0% 94.9%
3268382 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 50.0 4.94e-01 100.0% 91.8%
3421408 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.58 50.0 4.30e-01 97.5% 82.2%
3932751 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.58 40.0 3.39e-01 70.4% 76.9%
3608442 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 49.0 3.70e-01 96.3% 65.2%
3256903 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.57 41.0 3.51e-01 76.5% 78.5%
3712506 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 42.0 4.19e-01 81.5% 82.4%
185742 10.25.1.1 beta sandwiches › jelly-roll › Jelly-roll domain in peptidase M60 family › Jelly-roll domain in peptidase M60 family › M60-like_N 0.57 43.0 4.03e-01 98.8% 64.5%
4072878 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.57 43.0 4.41e-01 85.2% 83.7%
5079674 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.57 41.0 4.23e-01 77.8% 84.0%
5027848 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 49.0 4.43e-01 100.0% 85.2%
5046630 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 45.0 4.11e-01 100.0% 64.3%
5078822 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.56 43.0 3.87e-01 82.7% 90.4%
4338601 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.56 41.0 4.03e-01 80.2% 71.1%
4518787 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.56 42.0 4.42e-01 85.2% 88.0%
3244230 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.56 43.0 3.53e-01 82.7% 82.0%
5029398 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 48.0 4.41e-01 100.0% 83.5%
3599398 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.55 47.0 4.47e-01 100.0% 95.0%
3393575 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.55 47.0 3.79e-01 100.0% 77.1%
2392831 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.55 39.0 3.34e-01 72.8% 76.4%
3406312 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.55 39.0 3.46e-01 75.3% 80.5%
5038472 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 42.0 3.83e-01 82.7% 91.8%
3598259 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.55 41.0 3.55e-01 81.5% 84.4%
4927036 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.54 46.0 4.55e-01 97.5% 98.8%
5002658 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 46.0 3.64e-01 98.8% 68.1%
4012163 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.54 43.0 3.92e-01 88.9% 90.4%
3394892 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.54 45.0 3.52e-01 100.0% 73.8%
5043507 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.54 36.0 3.23e-01 70.4% 80.8%
4542558 105.2.1.71 alpha duplicates or obligate multimers › HLH-like › Dimerization domain in LRIM1/APL1C › Dimerization domain in LRIM1/APL1C › HMMR_N 0.54 46.0 3.29e-01 98.8% 30.4%
3503404 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 45.0 4.19e-01 100.0% 74.1%
3798522 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 43.0 3.87e-01 91.4% 95.0%
5031117 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 4.28e-01 97.5% 75.2%
5077148 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 4.38e-01 100.0% 80.0%
3596476 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.53 36.0 3.06e-01 71.6% 80.4%
3934036 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.53 37.0 3.32e-01 74.1% 83.3%
3681710 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.52 36.0 3.43e-01 71.6% 95.8%
4096140 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.52 39.0 3.43e-01 81.5% 82.4%
3789651 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 44.0 4.08e-01 100.0% 76.4%
5002129 10.1.1.126 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF7308 0.52 43.0 3.44e-01 100.0% 84.2%
3392173 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 39.0 2.70e-01 81.5% 91.8%
3902554 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 3.89e-01 91.4% 78.0%
3679402 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 39.0 3.22e-01 84.0% 96.9%
4042581 4.1.1.161 beta barrels › SH3 › SH3 › SH3 › DUF4178 0.51 39.0 3.19e-01 82.7% 59.4%
3245210 10.32.1.213 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 0.51 42.0 3.76e-01 100.0% 62.3%