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KF301602.1__AGS80969.1__X__00084
Bact-VirKF301602.1__AGS80969.1__X__00084
Identity
- Accession:
- KF301602 ↗
- Kingdom:
- phage
Quality
86.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-81
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.66 | 57.0 | 5.33e-01 | 100.0% | 78.9% |
| 2qsdA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.65 | 51.0 | 5.08e-01 | 100.0% | 83.6% |
| 1x9tA02 | 3.90.1620.10 | Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 | 0.63 | 53.0 | 3.55e-01 | 100.0% | 43.2% |
| 2bi0A02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.63 | 46.0 | 3.52e-01 | 79.0% | 76.2% |
| 4ic5A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.60 | 51.0 | 4.35e-01 | 100.0% | 58.7% |
| 3e0jB00 | 3.90.1030.20 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain | 0.59 | 49.0 | 3.76e-01 | 100.0% | 39.9% |
| 1h2cA00 | 2.70.20.20 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain | 0.59 | 51.0 | 4.11e-01 | 100.0% | 91.1% |
| 4a18X01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.59 | 50.0 | 4.67e-01 | 100.0% | 79.7% |
| 3bk5A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.58 | 52.0 | 3.47e-01 | 98.4% | 86.8% |
| 4bi3A01 | 3.90.1720.80 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.58 | 41.0 | 3.70e-01 | 96.8% | 51.6% |
| 2xzlA02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.58 | 46.0 | 4.31e-01 | 100.0% | 70.9% |
| 3agjF01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.57 | 48.0 | 3.95e-01 | 100.0% | 59.1% |
| 2ichA01 | 2.40.370.10 | Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain | 0.57 | 49.0 | 3.60e-01 | 100.0% | 93.3% |
| 3lq6A02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.56 | 49.0 | 4.03e-01 | 100.0% | 57.9% |
| 3cp7B02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 43.0 | 3.77e-01 | 100.0% | 54.3% |
| 2bhgA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 45.0 | 3.94e-01 | 98.4% | 59.8% |
| 2nytD00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.54 | 47.0 | 3.46e-01 | 100.0% | 36.9% |
| 4odbA00 | 2.60.90.20 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain | 0.54 | 46.0 | 3.50e-01 | 100.0% | 39.5% |
| 4kwyA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.54 | 41.0 | 3.33e-01 | 87.1% | 45.3% |
| 4lduA03 | 2.30.30.1040 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 44.0 | 4.35e-01 | 96.8% | 97.1% |
| 1r0uA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 47.0 | 3.65e-01 | 100.0% | 91.5% |
| 1dleB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 45.0 | 3.52e-01 | 96.8% | 62.0% |
| 2ok5A02 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.53 | 45.0 | 3.18e-01 | 100.0% | 37.9% |
| 6nffA02 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 44.0 | 2.88e-01 | 100.0% | 42.0% |
| 3ga2A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.52 | 41.0 | 2.99e-01 | 100.0% | 77.5% |
| 3p06A00 | 3.30.230.110 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.52 | 41.0 | 3.08e-01 | 96.8% | 55.2% |
| 3bxpB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 39.0 | 2.64e-01 | 85.5% | 49.6% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 33.0 | 3.23e-01 | 85.5% | 57.7% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.51 | 44.0 | 3.45e-01 | 98.4% | 80.1% |
| 6euaA01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.51 | 38.0 | 3.12e-01 | 100.0% | 38.8% |
| 4z48A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.51 | 43.0 | 2.99e-01 | 100.0% | 85.8% |
| 4h3wA02 | 2.60.120.1260 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 45.0 | 3.40e-01 | 100.0% | 41.4% |
| 2n3gA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 31.0 | 3.08e-01 | 85.5% | 51.4% |
| 3k0zA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 35.0 | 2.77e-01 | 85.5% | 30.9% |
| 1i7dA03 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.50 | 41.0 | 3.26e-01 | 95.2% | 94.3% |
| 2czoA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.50 | 36.0 | 2.94e-01 | 79.0% | 63.1% |
| 6zj8D01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 33.0 | 2.73e-01 | 80.6% | 36.0% |
| 2mc2A00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.50 | 40.0 | 2.98e-01 | 98.4% | 98.5% |
| 8t5tA01 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.50 | 43.0 | 3.14e-01 | 100.0% | 81.6% |
| 2f5tX02 | 2.30.30.690 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 41.0 | 3.76e-01 | 100.0% | 80.0% |
| 6gp1A00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.50 | 40.0 | 4.00e-01 | 90.3% | 86.2% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5065436 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.71 | 63.0 | 6.25e-01 | 100.0% | 93.8% |
| 4983090 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.71 | 61.0 | 5.63e-01 | 98.4% | 74.7% |
| 5000510 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.70 | 60.0 | 5.62e-01 | 100.0% | 78.7% |
| 2831852 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.69 | 60.0 | 5.11e-01 | 100.0% | 59.4% |
| 2512518 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.69 | 60.0 | 5.07e-01 | 100.0% | 59.4% |
| 4943401 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.68 | 61.0 | 5.50e-01 | 100.0% | 72.9% |
| 4084879 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.68 | 61.0 | 5.50e-01 | 100.0% | 75.3% |
| 4128974 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.67 | 60.0 | 5.51e-01 | 100.0% | 80.0% |
| 4674170 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.66 | 59.0 | 4.73e-01 | 100.0% | 56.7% |
| 4607738 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.65 | 58.0 | 4.78e-01 | 100.0% | 62.7% |
| 3593803 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.65 | 55.0 | 3.97e-01 | 95.2% | 95.0% |
| 5032784 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.61 | 45.0 | 3.99e-01 | 100.0% | 52.6% |
| 3874464 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.61 | 53.0 | 3.31e-01 | 100.0% | 17.7% |
| 3813872 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.59 | 48.0 | 3.18e-01 | 95.2% | 99.3% |
| 3619496 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 50.0 | 3.11e-01 | 100.0% | 18.9% |
| 3987406 | 3115.6.1.1 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY | 0.57 | 46.0 | 4.40e-01 | 95.2% | 84.0% |
| 4991389 | 10.1.1.117 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin | 0.57 | 51.0 | 3.32e-01 | 100.0% | 60.8% |
| 3894181 | 101.1.2.115 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDC27 | 0.57 | 47.0 | 3.42e-01 | 100.0% | 32.6% |
| 3220022 | 382.1.1.27 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › DUF7773 | 0.57 | 48.0 | 3.94e-01 | 95.2% | 61.0% |
| 4872941 | 10.2.1.43 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat_C | 0.57 | 48.0 | 4.00e-01 | 100.0% | 53.8% |
| 3602156 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.57 | 49.0 | 3.62e-01 | 96.8% | 47.5% |
| 5074866 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.56 | 48.0 | 3.50e-01 | 100.0% | 95.8% |
| 3672943 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.56 | 41.0 | 4.13e-01 | 85.5% | 78.5% |
| 4987303 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.56 | 46.0 | 4.05e-01 | 100.0% | 100.0% |
| 4936008 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.56 | 47.0 | 4.20e-01 | 100.0% | 72.6% |
| 2532980 | 219.1.1.53 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Vasohibin | 0.56 | 48.0 | 3.25e-01 | 100.0% | 31.5% |
| 1678098 | 1.1.7.56 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Arabinose_Iso_C | 0.56 | 48.0 | 3.60e-01 | 100.0% | 56.8% |
| 3236876 | 1.1.5.49 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 | 0.56 | 42.0 | 2.87e-01 | 100.0% | 19.9% |
| 4978132 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 46.0 | 3.83e-01 | 100.0% | 76.0% |
| 3599332 | 219.1.1.53 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Vasohibin | 0.56 | 48.0 | 3.17e-01 | 100.0% | 30.2% |
| 3498264 | 219.1.1.53 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Vasohibin | 0.55 | 48.0 | 3.21e-01 | 100.0% | 31.8% |
| 5033844 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.55 | 48.0 | 3.23e-01 | 98.4% | 87.1% |
| 901 | 4252.1.1.1 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › CrtC | 0.55 | 46.0 | 3.41e-01 | 100.0% | 89.9% |
| 3706101 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 47.0 | 3.32e-01 | 100.0% | 39.0% |
| 4885862 | 206.1.3.19 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C | 0.54 | 41.0 | 2.86e-01 | 85.5% | 50.8% |
| 3513396 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.54 | 39.0 | 2.91e-01 | 79.0% | 51.7% |
| 5005105 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.54 | 45.0 | 4.06e-01 | 98.4% | 98.9% |
| 3315951 | 220.1.1.86 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N | 0.54 | 46.0 | 4.32e-01 | 100.0% | 98.7% |
| 3597134 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.54 | 45.0 | 3.00e-01 | 100.0% | 26.8% |
| 4303858 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.53 | 44.0 | 3.25e-01 | 93.5% | 63.5% |
| 5050551 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.53 | 43.0 | 3.40e-01 | 96.8% | 96.7% |
| 3787702 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.53 | 44.0 | 3.44e-01 | 100.0% | 97.4% |
| 5029482 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.53 | 38.0 | 3.50e-01 | 82.3% | 58.7% |
| 3225074 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.53 | 43.0 | 3.76e-01 | 100.0% | 97.3% |
| 3331651 | 11.1.4.8 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Pollen_Ole_e_1 | 0.52 | 44.0 | 3.45e-01 | 100.0% | 42.9% |
| 3771406 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 44.0 | 3.56e-01 | 96.8% | 87.2% |
| 185776 | 10.2.1.52 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › DUF4621 | 0.52 | 46.0 | 3.42e-01 | 100.0% | 45.0% |
| 3468940 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.51 | 41.0 | 2.66e-01 | 95.2% | 98.8% |
| 1548777 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.51 | 43.0 | 2.99e-01 | 100.0% | 85.8% |
| 4498332 | 71.1.1.2 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA | 0.51 | 42.0 | 3.25e-01 | 100.0% | 78.2% |
| 3971020 | 71.1.1.13 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF1329 | 0.50 | 43.0 | 2.76e-01 | 100.0% | 76.4% |
| 3282593 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.50 | 44.0 | 2.95e-01 | 98.4% | 59.2% |