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KF301602.1__AGS80978.1__X__00093
Bact-VirKF301602.1__AGS80978.1__X__00093
Identity
- Accession:
- KF301602 ↗
- Kingdom:
- phage
Quality
89.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-60
Domain cluster:
rep: OR067833.1__WLW40906.1__GNAINCEL_00124__00124__D3-68
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l2bA01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.62 | 45.0 | 3.66e-01 | 79.7% | 85.5% |
| 8gpsA02 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.60 | 44.0 | 3.62e-01 | 78.0% | 85.0% |
| 4g7nA02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.59 | 50.0 | 4.27e-01 | 96.6% | 59.8% |
| 4c5wA02 | 3.60.130.10 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like | 0.59 | 50.0 | 3.24e-01 | 96.6% | 42.5% |
| 3bzcA03 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.58 | 42.0 | 3.25e-01 | 76.3% | 90.6% |
| 3ed4A02 | 3.30.1120.10 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.57 | 48.0 | 4.40e-01 | 100.0% | 77.1% |
| 3kxrA02 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.56 | 45.0 | 3.58e-01 | 91.5% | 84.9% |
| 1r75A00 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.55 | 40.0 | 3.27e-01 | 76.3% | 78.2% |
| 4cooA03 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.55 | 39.0 | 3.08e-01 | 78.0% | 77.4% |
| 2nn6A01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.54 | 48.0 | 3.04e-01 | 100.0% | 55.0% |
| 1j8bA00 | 3.30.1310.10 | Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain | 0.54 | 46.0 | 4.03e-01 | 96.6% | 67.4% |
| 1ybxA00 | 3.30.1310.10 | Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain | 0.54 | 46.0 | 4.03e-01 | 96.6% | 70.3% |
| 3cynB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 46.0 | 3.34e-01 | 100.0% | 90.8% |
| 4fuqC01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.52 | 40.0 | 2.43e-01 | 100.0% | 12.2% |
| 3f42A00 | 3.30.1310.10 | Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain | 0.52 | 45.0 | 3.89e-01 | 96.6% | 65.6% |
| 4ht4A00 | 3.30.930.30 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › | 0.52 | 45.0 | 3.20e-01 | 100.0% | 67.0% |
| 3cnwA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 44.0 | 3.38e-01 | 94.9% | 82.3% |
| 4ci8A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 44.0 | 2.82e-01 | 100.0% | 56.5% |
| 4o9dA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 42.0 | 2.65e-01 | 98.3% | 50.1% |
| 4mtnA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.52 | 40.0 | 3.54e-01 | 89.8% | 63.2% |
| 2m3xC02 | 2.40.10.360 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.52 | 38.0 | 3.61e-01 | 78.0% | 68.1% |
| 4v19S00 | 3.30.420.80 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 | 0.52 | 35.0 | 2.74e-01 | 71.2% | 71.3% |
| 2o5nA02 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.51 | 45.0 | 3.32e-01 | 100.0% | 96.8% |
| 1u04A04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 42.0 | 2.92e-01 | 94.9% | 96.4% |
| 3zgzD04 | 2.20.28.290 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.50 | 35.0 | 3.46e-01 | 74.6% | 69.4% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3973990 | 282.1.1.0 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain | 0.67 | 56.0 | 4.65e-01 | 96.6% | 83.6% |
| 3455239 | 292.2.1.12 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Calmod_bind_C | 0.62 | 48.0 | 4.81e-01 | 83.1% | 81.7% |
| 4957048 | 2498.2.1.0 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain | 0.61 | 41.0 | 3.09e-01 | 71.2% | 35.9% |
| 3682683 | 5.1.3.7 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL | 0.60 | 51.0 | 3.44e-01 | 100.0% | 37.6% |
| 3967100 | 2003.1.5.13 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth | 0.60 | 43.0 | 2.89e-01 | 78.0% | 40.8% |
| 3460631 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.60 | 46.0 | 3.45e-01 | 83.1% | 33.8% |
| 3909868 | 221.1.1.89 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Il2rg | 0.57 | 50.0 | 3.95e-01 | 98.3% | 71.7% |
| 3751478 | 220.1.1.86 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N | 0.56 | 41.0 | 3.88e-01 | 81.4% | 90.7% |
| 3174597 | 633.23.1.9 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 | 0.56 | 50.0 | 3.30e-01 | 100.0% | 78.3% |
| 4504596 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.55 | 47.0 | 4.07e-01 | 94.9% | 61.1% |
| 3221919 | 246.3.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like | 0.55 | 39.0 | 2.36e-01 | 74.6% | 19.2% |
| 4454311 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.55 | 47.0 | 3.94e-01 | 94.9% | 62.0% |
| 4391637 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.54 | 47.0 | 4.12e-01 | 96.6% | 67.8% |
| 4067487 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.54 | 47.0 | 3.98e-01 | 94.9% | 60.0% |
| 3914831 | 3417.1.1.1 ↗ | a+b three layers › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › BRICHOS | 0.54 | 39.0 | 3.64e-01 | 79.7% | 78.8% |
| 4197141 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.54 | 46.0 | 3.86e-01 | 94.9% | 56.0% |
| 4509956 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.54 | 46.0 | 4.45e-01 | 94.9% | 86.2% |
| 3290578 | 245.2.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB | 0.53 | 44.0 | 3.78e-01 | 94.9% | 59.0% |
| 3647663 | 5.1.10.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › ANAPC4_WD40 | 0.53 | 39.0 | 3.94e-01 | 83.1% | 78.3% |
| 3723377 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.53 | 47.0 | 3.69e-01 | 100.0% | 92.8% |
| 3436556 | 220.1.1.86 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N | 0.53 | 39.0 | 3.67e-01 | 81.4% | 92.0% |
| 4139864 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.53 | 45.0 | 3.85e-01 | 96.6% | 65.3% |
| 4014469 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.53 | 39.0 | 3.14e-01 | 84.7% | 44.4% |
| 3819869 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.53 | 39.0 | 3.37e-01 | 81.4% | 71.6% |
| 3269373 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 43.0 | 3.78e-01 | 91.5% | 91.1% |
| 4498285 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.52 | 43.0 | 3.78e-01 | 96.6% | 62.1% |
| 3283467 | 206.1.1.153 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › FhuF_C | 0.52 | 44.0 | 3.12e-01 | 98.3% | 65.0% |
| 4096246 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.51 | 43.0 | 4.20e-01 | 96.6% | 86.2% |
| 3960596 | 245.2.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB | 0.51 | 42.0 | 3.81e-01 | 94.9% | 67.1% |
| 3384455 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.51 | 43.0 | 3.14e-01 | 100.0% | 31.9% |