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KF301602.1__AGS81042.1__X__00157

Bact-Vir

KF301602.1__AGS81042.1__X__00157

Identity

Accession:
KF301602 ↗
Kingdom:
phage

Quality

78.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Caulobacter_phage_Cr30

TaxID: 1357714

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-91
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2z5bA00 3.30.230.100 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.76 35.0 3.05e-01 75.3% 29.9%
5o60I00 3.30.70.1730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein L10, N-terminal RNA-binding domain 0.72 52.0 4.51e-01 75.3% 83.3%
7ejoB01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.66 48.0 4.87e-01 76.5% 100.0%
3c3dA02 1.10.8.240 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › CofD-like domain 0.64 47.0 4.64e-01 75.3% 98.9%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.64 48.0 4.92e-01 80.0% 100.0%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.64 49.0 4.69e-01 82.4% 98.0%
2i0kA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.64 35.0 3.08e-01 91.8% 36.5%
1qdmA03 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.61 43.0 4.51e-01 100.0% 81.8%
2x3mA00 1.25.40.670 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 49.0 4.01e-01 90.6% 98.8%
2whnA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.60 41.0 3.76e-01 96.5% 54.5%
3lupA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 52.0 4.31e-01 100.0% 95.5%
4ammA00 3.40.366.10 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 0.57 45.0 2.97e-01 87.1% 66.9%
2p0tA02 1.10.60.30 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains 0.56 38.0 4.05e-01 98.8% 80.6%
3nctA00 3.40.50.11880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Plasmid SOS inhibition protein 0.56 50.0 4.23e-01 96.5% 92.0%
2g7zA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 49.0 4.07e-01 100.0% 94.8%
2aplA01 1.10.8.330 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like 0.56 40.0 4.41e-01 75.3% 97.1%
7d1tA01 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.55 45.0 3.58e-01 90.6% 91.8%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.55 44.0 3.60e-01 88.2% 83.2%
2kgfA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.53 42.0 3.67e-01 89.4% 100.0%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 42.0 2.74e-01 88.2% 36.0%
3jr7A01 3.40.50.10440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 0.51 46.0 4.16e-01 100.0% 93.2%
7vtgA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.50 44.0 3.05e-01 97.6% 99.0%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3410191 304.60.1.2 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 0.71 59.0 4.31e-01 88.2% 53.0%
3285401 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.71 50.0 5.32e-01 74.1% 97.3%
5064428 4070.1.1.2 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.65 55.0 4.06e-01 92.9% 62.4%
3923043 4326.1.1.1 ↗ a+b two layers › ERH-like › ERH-like › ERH-like › ER 0.64 48.0 4.62e-01 81.2% 98.0%
3945340 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.62 52.0 4.30e-01 100.0% 51.3%
4933143 842.1.1.1 ↗ a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.58 43.0 3.22e-01 77.6% 61.6%
3218028 180.1.1.1 ↗ alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.56 38.0 2.76e-01 70.6% 88.5%
5054516 842.1.1.0 ↗ a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 0.54 48.0 3.66e-01 95.3% 44.9%
3349141 375.1.1.182 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7086 0.53 40.0 3.49e-01 82.4% 92.9%
3214883 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.51 39.0 3.24e-01 84.7% 78.8%
11143 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.50 45.0 2.96e-01 100.0% 86.4%
5047887 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.50 43.0 3.22e-01 100.0% 38.1%