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KF301602.1__AGS81064.1__X__00179

Bact-Vir

KF301602.1__AGS81064.1__X__00179

Identity

Accession:
KF301602 ↗
Kingdom:
phage

Quality

73.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Caulobacter_phage_Cr30

TaxID: 1357714

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 190-290
PDB
Domain cluster: rep: LacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00294__D106-220
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3r3pB00 3.40.960.10 Alpha Beta › 3-Layer(aba) Sandwich › Endonuclease; Chain A › VSR Endonuclease 0.86 73.0 7.45e-01 100.0% 92.9%
5awhA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.67 61.0 5.02e-01 100.0% 73.2%
7kx9A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.65 59.0 5.25e-01 100.0% 72.9%
7b7pA01 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.64 57.0 4.25e-01 100.0% 85.6%
5idyA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.64 57.0 4.26e-01 100.0% 84.0%
6oz7B00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.64 56.0 4.35e-01 100.0% 86.9%
1q44A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 57.0 4.15e-01 100.0% 56.7%
4kzpB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 56.0 4.12e-01 100.0% 72.8%
4e3zB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 56.0 4.37e-01 100.0% 89.5%
3pxxD00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 56.0 4.14e-01 100.0% 86.8%
3wtbC00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 56.0 4.29e-01 100.0% 88.5%
4rgbA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 56.0 4.13e-01 100.0% 86.9%
3vnaA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 57.0 5.00e-01 100.0% 75.7%
2reoA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 57.0 4.49e-01 100.0% 60.4%
3ausA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 55.0 4.15e-01 100.0% 84.0%
5iz4A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 54.0 4.16e-01 99.0% 87.9%
3tscA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 54.0 4.03e-01 100.0% 87.1%
1h5qA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 54.0 4.09e-01 100.0% 85.0%
4da9B00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 54.0 4.28e-01 100.0% 83.8%
3efoB04 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.61 53.0 4.03e-01 98.0% 92.2%
4c7oA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 51.0 4.09e-01 91.1% 82.0%
4ncbA05 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 55.0 4.83e-01 100.0% 68.7%
3qq5A02 3.40.50.11420 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 37.0 3.67e-01 76.2% 56.9%
3lucA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 53.0 4.97e-01 100.0% 81.2%
4c6rA00 3.40.50.10140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain 0.60 54.0 4.60e-01 100.0% 90.1%
2qi2A03 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.59 40.0 4.13e-01 84.2% 73.4%
3qk7A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 52.0 4.66e-01 100.0% 73.9%
1f14A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 51.0 4.14e-01 100.0% 85.2%
3adoA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 50.0 4.16e-01 100.0% 88.2%
5jvkA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.57 48.0 3.41e-01 94.1% 83.2%
2nxwA01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.56 49.0 4.14e-01 100.0% 79.4%
1zcjA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 50.0 4.13e-01 100.0% 86.4%
4om8A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 50.0 4.11e-01 100.0% 85.9%
4e12A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 49.0 4.05e-01 100.0% 84.5%
5e9fD01 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.56 44.0 2.96e-01 86.1% 62.3%
2dsgA01 3.40.1010.10 Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain 0.55 41.0 3.94e-01 87.1% 69.3%
2vq3A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 48.0 4.02e-01 100.0% 80.1%
4yt2A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 49.0 3.91e-01 100.0% 76.0%
4pagA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.55 47.0 4.33e-01 97.0% 81.6%
1bplA01 3.30.750.90 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.55 39.0 3.89e-01 74.3% 97.1%
3b1fA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 48.0 4.04e-01 100.0% 85.7%
4wiaC00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 47.0 3.66e-01 97.0% 72.1%
3bblA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 48.0 4.35e-01 100.0% 74.6%
3egcA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 48.0 4.39e-01 100.0% 76.7%
4ijaB02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 46.0 4.07e-01 99.0% 87.9%
3a1iA02 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.53 45.0 2.99e-01 97.0% 86.6%
4q48A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 41.0 3.39e-01 88.1% 78.5%
3tpaA03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.51 42.0 3.36e-01 92.1% 60.6%
3wxmB03 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.51 38.0 3.78e-01 84.2% 74.8%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995781 2008.1.1.17 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF559 0.84 74.0 7.60e-01 100.0% 98.9%
4984120 2008.1.1.17 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF559 0.83 78.0 7.69e-01 100.0% 99.0%
3979018 2008.1.1.14 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Vsr 0.83 78.0 6.69e-01 100.0% 77.3%
4995749 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.83 78.0 7.57e-01 100.0% 93.6%
5069856 2008.1.1.17 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF559 0.83 71.0 6.83e-01 99.0% 80.9%
3163838 2008.1.1.17 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF559 0.83 73.0 6.95e-01 100.0% 82.6%
3281852 2008.1.1.14 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Vsr 0.81 76.0 6.62e-01 100.0% 77.2%
4467650 2008.1.1.167 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Vsr, DUF559 0.81 75.0 6.76e-01 100.0% 83.7%
5053107 2008.1.1.14 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Vsr 0.80 74.0 6.74e-01 99.0% 82.9%
4995722 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.80 73.0 7.41e-01 99.0% 100.0%
4940995 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.79 74.0 7.19e-01 100.0% 95.5%
5056125 2008.1.1.14 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Vsr 0.79 73.0 6.69e-01 100.0% 86.9%
3953988 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.78 70.0 6.90e-01 100.0% 93.3%
4093880 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 72.0 4.18e-01 100.0% 14.7%
4028819 2008.1.1.86 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP 0.77 71.0 7.05e-01 100.0% 96.2%
3953141 2008.1.1.121 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › MTES_1575 0.77 70.0 6.92e-01 100.0% 95.2%
3963196 2008.1.1.17 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF559 0.77 68.0 6.68e-01 100.0% 89.8%
4027159 2008.1.1.86 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP 0.76 71.0 6.76e-01 100.0% 91.3%
4026799 2008.1.1.86 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP 0.76 70.0 6.73e-01 100.0% 87.8%
4025795 2008.1.1.86 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP 0.76 70.0 6.43e-01 100.0% 87.7%
3808239 2008.1.1.86 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP 0.76 69.0 7.02e-01 100.0% 100.0%
4027449 2008.1.1.86 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP 0.75 70.0 6.90e-01 100.0% 96.2%
4025196 109.4.1.315 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RAP 0.75 69.0 4.23e-01 100.0% 17.7%
3673147 2008.1.1.86 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP 0.75 69.0 6.56e-01 100.0% 87.0%
4028756 2008.1.1.86 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP 0.75 67.0 5.65e-01 100.0% 60.6%
3402688 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.75 69.0 5.32e-01 100.0% 66.8%
4030733 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.74 67.0 6.63e-01 100.0% 94.2%
3278386 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.73 67.0 6.14e-01 100.0% 80.0%
4030490 2008.1.1.124 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF6831 0.73 67.0 6.66e-01 99.0% 98.1%
3993835 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 67.0 4.13e-01 99.0% 21.1%
4927469 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.73 66.0 6.13e-01 100.0% 86.4%
4027879 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.72 64.0 6.39e-01 100.0% 94.3%
4027698 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.71 66.0 4.65e-01 100.0% 39.7%
4029829 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.70 64.0 6.26e-01 100.0% 94.5%
1148114 2004.1.1.217 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › HydF_dimer 0.64 44.0 4.38e-01 90.1% 68.9%
9576 2004.1.1.51 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_1 0.64 57.0 4.28e-01 100.0% 63.4%
3600191 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 55.0 4.28e-01 100.0% 70.7%
141864 2003.1.1.69 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 0.61 54.0 3.97e-01 100.0% 86.9%
3999635 7590.1.1.0 ↗ a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs 0.61 55.0 4.97e-01 100.0% 74.1%
3889060 2004.1.1.118 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 0.60 54.0 4.01e-01 100.0% 61.5%
4384064 2006.1.6.33 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_4 0.59 52.0 4.09e-01 100.0% 76.4%
5079607 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.58 49.0 3.73e-01 95.0% 88.1%
4932841 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.58 39.0 4.07e-01 86.1% 75.3%
4975517 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.57 47.0 3.85e-01 88.1% 54.1%
1933305 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.57 48.0 3.41e-01 92.1% 83.4%
3935808 2006.1.6.33 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_4 0.57 50.0 4.13e-01 100.0% 91.1%
4985004 2003.1.1.36 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N 0.56 50.0 4.36e-01 99.0% 93.5%
3641485 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.56 45.0 3.91e-01 100.0% 55.6%
3633961 2002.1.1.3 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TIM 0.56 47.0 3.55e-01 94.1% 92.7%
3988892 2003.1.1.147 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › PDH_N, F420_oxidored 0.56 50.0 4.08e-01 100.0% 81.1%
4945226 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 48.0 3.46e-01 95.0% 57.1%
4943578 301.1.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like 0.55 40.0 4.11e-01 85.1% 78.0%
5054809 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.54 43.0 4.33e-01 85.1% 81.9%
3667202 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.54 43.0 4.51e-01 86.1% 96.7%
3633942 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.53 44.0 3.10e-01 91.1% 48.4%
4952835 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.52 42.0 3.58e-01 89.1% 77.6%
5049702 7581.1.1.0 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like 0.52 41.0 3.20e-01 89.1% 42.9%
4012872 129.1.1.0 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like 0.51 42.0 3.44e-01 91.1% 86.2%
None — 0.50 40.0 3.17e-01 86.1% 53.2%
D2 high residues 295-414
PDB
Domain cluster: rep: IMGVR_UViG_3300028925_007698-3300028925-Ga0310698_11502092__D6-141_209-227
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25680.2 best Mom 29.8 6.30e-07 93.3% 28.2%
D3 high residues 421-464
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.68 56.0 4.87e-01 100.0% 60.6%
2zt5A02 3.30.40.230 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.63 52.0 4.37e-01 100.0% 90.5%
3we5A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.62 47.0 3.45e-01 90.9% 63.8%
1wgrA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 45.0 3.73e-01 100.0% 45.1%
2qyzA01 3.30.1490.160 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ctc02137 like domains 0.60 49.0 4.76e-01 100.0% 86.8%
3ujzA03 2.60.20.40 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › 0.59 44.0 3.44e-01 100.0% 37.0%
2f2hA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 40.0 3.92e-01 95.5% 66.7%
5tdrA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 37.0 3.31e-01 90.9% 44.3%
6phxA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 45.0 3.56e-01 97.7% 43.2%
3gv4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 42.0 3.27e-01 100.0% 37.4%
4ccgY00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 42.0 3.86e-01 95.5% 70.1%
2yfoA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 44.0 3.47e-01 97.7% 42.7%
2cklB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 46.0 4.00e-01 100.0% 63.4%
3u31A02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.54 46.0 3.58e-01 100.0% 43.4%
6nw1A00 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.53 46.0 4.58e-01 97.7% 97.8%
4n4fA02 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 34.0 3.50e-01 90.9% 70.0%
2yu4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 44.0 3.53e-01 100.0% 58.5%
2csvA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 35.0 3.08e-01 100.0% 41.7%
2y43A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 43.0 3.57e-01 100.0% 48.9%
4rg8A02 3.30.1520.20 Alpha Beta › 2-Layer Sandwich › PX Domain › Exonuclease ExoI, domain 2 0.52 36.0 2.63e-01 75.0% 73.6%
2lvhA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.52 43.0 4.35e-01 100.0% 91.1%
2cklA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 43.0 3.44e-01 100.0% 48.0%
2doaA00 1.10.10.2670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › E3 ubiquitin-protein ligase 0.51 38.0 3.10e-01 90.9% 38.5%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3314956 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.69 51.0 4.91e-01 100.0% 70.0%
5004620 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 49.0 5.06e-01 100.0% 87.5%
3255511 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.63 52.0 3.42e-01 100.0% 21.6%
3417508 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.63 44.0 4.28e-01 90.9% 66.0%
5022472 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 54.0 4.92e-01 100.0% 88.3%
4957546 375.1.1.325 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › OapC 0.63 46.0 4.60e-01 100.0% 77.8%
4469129 301.9.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA 0.63 44.0 3.28e-01 100.0% 28.7%
3626325 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 52.0 4.08e-01 100.0% 66.7%
4939580 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 47.0 4.86e-01 100.0% 92.5%
4947285 314.1.1.50 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › HGTP_anticodon 0.61 53.0 3.03e-01 100.0% 12.3%
3860225 2003.1.4.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2 0.61 51.0 3.17e-01 100.0% 23.4%
5054247 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 52.0 4.68e-01 100.0% 87.7%
5035538 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.61 52.0 3.08e-01 100.0% 14.7%
3958291 2003.1.4.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain 0.61 52.0 3.21e-01 100.0% 25.8%
4944130 314.1.1.50 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › HGTP_anticodon 0.61 52.0 3.08e-01 100.0% 14.9%
5011230 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.61 52.0 3.00e-01 100.0% 12.7%
3397204 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 53.0 4.08e-01 100.0% 48.0%
3891467 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 49.0 4.42e-01 95.5% 100.0%
4472979 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.60 51.0 3.00e-01 100.0% 15.3%
None — 0.60 51.0 3.42e-01 100.0% 23.8%
5068907 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 49.0 4.88e-01 100.0% 88.9%
4037483 375.1.1.180 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › GlyRS_ins_1 0.60 51.0 4.45e-01 100.0% 90.0%
None — 0.59 42.0 4.17e-01 100.0% 73.3%
3706777 386.1.1.14 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-LYAR 0.59 41.0 3.87e-01 100.0% 60.0%
5076903 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 48.0 4.68e-01 97.7% 94.0%
4004118 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.58 50.0 3.32e-01 100.0% 23.8%
4206445 2003.1.4.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2 0.57 45.0 2.84e-01 100.0% 15.7%
3686300 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.57 50.0 4.37e-01 100.0% 66.2%
3812939 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.57 39.0 3.62e-01 90.9% 53.3%
3832452 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.57 38.0 3.00e-01 90.9% 31.6%
3743358 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.56 46.0 4.26e-01 97.7% 73.3%
5065494 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.56 43.0 4.17e-01 95.5% 76.0%
5052386 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 44.0 4.61e-01 95.5% 100.0%
3183646 376.1.1.61 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 0.54 44.0 3.68e-01 100.0% 50.6%
144676 12.1.1.27 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_36C 0.54 44.0 3.49e-01 97.7% 42.7%
3928472 376.1.1.95 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RH_dom 0.54 35.0 3.15e-01 79.5% 43.1%
3998356 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 45.0 4.55e-01 100.0% 93.3%
3713646 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.54 43.0 3.39e-01 100.0% 49.1%
3805637 376.1.1.61 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 0.53 44.0 3.73e-01 100.0% 53.8%
3376193 376.1.1.91 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-Di19 0.53 43.0 4.23e-01 100.0% 94.0%
4039609 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 46.0 4.11e-01 100.0% 95.4%
3249904 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.53 41.0 3.49e-01 100.0% 50.0%
3562527 386.1.1.358 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451 0.53 41.0 3.75e-01 100.0% 63.3%
3532763 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.52 44.0 4.13e-01 100.0% 78.2%
3648132 3203.1.1.1 ↗ a+b two layers › Putative oxidoreductase › Putative oxidoreductase › Putative oxidoreductase › NDUS4 0.52 38.0 3.18e-01 79.5% 95.0%
3898196 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 45.0 4.23e-01 100.0% 90.9%
3990579 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.52 43.0 3.38e-01 100.0% 41.9%
3221156 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.51 37.0 3.56e-01 95.5% 67.3%
D4 high residues 502-556
PDB
Domain cluster: rep: HQ641346.1__ADX87800.1__TU12-16_00230__00046__D113-165
D5 medium residues 114-172
PDB