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KF356198.1__AGR48539.1__A4L_12__00012

Bact-Vir

KF356198.1__AGR48539.1__A4L_12__00012

Identity

Accession:
KF356198 ↗
Kingdom:
phage

Quality

61.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 90-164
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p3yA02 1.10.3360.10 Mainly Alpha › Orthogonal Bundle › VPA0735-like fold › VPA0735-like domain 0.76 62.0 5.56e-01 90.7% 99.1%
3a1yA00 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.73 49.0 5.50e-01 80.0% 91.4%
4a8eA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.72 53.0 5.11e-01 92.0% 67.8%
1uyvB02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.71 46.0 3.06e-01 74.7% 17.2%
4ragA02 1.10.10.430 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphatase 2C, C-terminal domain suprefamily 0.70 53.0 5.51e-01 90.7% 89.7%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 46.0 4.44e-01 81.3% 62.4%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.67 51.0 5.61e-01 82.7% 96.8%
3okqA00 1.20.58.1540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain 0.67 38.0 3.23e-01 92.0% 34.4%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.65 46.0 4.73e-01 89.3% 79.7%
1a3qA01 2.60.40.340 Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain 0.64 46.0 3.51e-01 76.0% 49.7%
1om2A00 1.20.960.10 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › Mitochondrial outer membrane translocase complex, subunit Tom20 domain 0.63 42.0 3.94e-01 98.7% 54.7%
4i0xH00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.62 39.0 3.92e-01 82.7% 61.8%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.62 43.0 4.64e-01 84.0% 91.7%
2oznB01 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.62 37.0 3.68e-01 84.0% 56.2%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.61 49.0 4.56e-01 98.7% 69.1%
3fm9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 47.0 4.67e-01 84.0% 84.6%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 45.0 4.41e-01 80.0% 91.4%
1irxA04 1.10.10.770 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 52.0 4.68e-01 97.3% 90.7%
1sqgA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.60 52.0 4.32e-01 100.0% 53.9%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 51.0 4.61e-01 96.0% 72.4%
2j0wA02 1.20.120.1320 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartokinase, catalytic domain 0.59 44.0 4.17e-01 80.0% 72.0%
7p2yd01 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.59 46.0 4.25e-01 85.3% 82.8%
7jv7B01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 49.0 4.04e-01 96.0% 49.3%
4jqfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 48.0 4.87e-01 90.7% 100.0%
2or0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.58 38.0 2.87e-01 84.0% 26.9%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.58 42.0 4.64e-01 78.7% 100.0%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 49.0 4.60e-01 96.0% 81.5%
1ma1A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.57 38.0 4.15e-01 84.0% 81.2%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 47.0 4.53e-01 92.0% 82.4%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.56 46.0 4.57e-01 94.7% 88.9%
3tjmA02 1.10.1470.20 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 0.56 41.0 3.91e-01 80.0% 72.2%
4kwaB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 42.0 3.27e-01 90.7% 34.4%
7qocA01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.55 41.0 3.10e-01 81.3% 35.3%
6r1nA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.55 39.0 3.50e-01 82.7% 54.4%
4ocqA01 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.54 46.0 3.35e-01 100.0% 52.5%
2kp8A00 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.54 36.0 3.71e-01 81.3% 72.2%
2lpeA01 6.10.140.1120 Special › Helix non-globular › Helix Hairpins › 0.54 38.0 3.78e-01 86.7% 70.5%
4z4qA04 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.53 40.0 3.87e-01 98.7% 71.9%
2hzdA00 6.10.20.40 Special › Helix non-globular › Arc Repressor Mutant, subunit A › TEA/ATTS domain 0.53 45.0 4.48e-01 100.0% 95.1%
1zkeA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 38.0 3.74e-01 77.3% 85.2%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 43.0 4.11e-01 100.0% 79.3%
3r6nA02 1.20.58.1060 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 40.0 3.23e-01 85.3% 47.7%
1h99A01 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.51 43.0 3.98e-01 100.0% 100.0%
2v8pA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 43.0 3.38e-01 92.0% 83.2%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.51 39.0 3.83e-01 81.3% 83.5%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.51 37.0 3.60e-01 81.3% 69.5%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.51 41.0 3.90e-01 93.3% 77.7%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4931573 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 53.0 5.87e-01 76.0% 93.3%
3795754 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 58.0 5.29e-01 94.7% 63.0%
4025053 101.1.2.166 alpha arrays › HTH › HTH › winged helix domain › MCM6_C 0.74 66.0 6.06e-01 97.3% 95.8%
3436562 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 59.0 5.93e-01 89.3% 86.7%
5000878 1091.1.1.0 alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 0.73 49.0 5.09e-01 78.7% 74.3%
5059135 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.72 40.0 4.13e-01 89.3% 58.6%
4009408 639.2.1.1 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › YmgB 0.72 50.0 5.25e-01 72.0% 83.8%
4994458 632.12.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Vng1086c-like › Vng1086c-like › UPF0058 0.71 36.0 3.57e-01 93.3% 46.3%
3286911 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 56.0 5.77e-01 88.0% 91.4%
3404571 101.1.2.206 alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.70 59.0 5.81e-01 90.7% 91.3%
3488744 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.70 54.0 5.70e-01 82.7% 98.5%
4009124 639.2.1.5 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › PF27475 0.70 54.0 5.95e-01 81.3% 100.0%
5045172 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.70 59.0 3.93e-01 96.0% 38.7%
3943035 639.2.1.0 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.69 55.0 5.88e-01 86.7% 100.0%
5047067 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 60.0 5.76e-01 97.3% 95.3%
3488594 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.68 53.0 5.50e-01 96.0% 92.9%
3274011 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 49.0 5.23e-01 90.7% 89.2%
4956455 4163.1.2.0 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like 0.67 43.0 3.92e-01 94.7% 49.0%
4006612 639.2.1.1 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › YmgB 0.67 50.0 4.81e-01 78.7% 71.8%
3255275 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 48.0 5.24e-01 90.7% 95.0%
5057164 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 57.0 5.18e-01 94.7% 78.0%
5048461 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 57.0 5.53e-01 97.3% 96.5%
3788865 101.1.2.374 alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.65 51.0 5.08e-01 96.0% 83.7%
5056734 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 56.0 4.87e-01 96.0% 68.7%
4975992 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.64 46.0 4.31e-01 78.7% 60.0%
4022486 101.1.2.374 alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.64 57.0 5.43e-01 100.0% 88.9%
3452645 101.35.1.31 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Gliadin 0.63 50.0 4.69e-01 89.3% 75.8%
3234110 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.62 51.0 3.81e-01 90.7% 71.8%
5031662 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.62 52.0 4.35e-01 90.7% 60.0%
3470048 101.6.1.1 alpha arrays › HTH › Protein serine/threonine phosphatase 2C-C › Protein serine/threonine phosphatase 2C-C › PP2C_C 0.62 53.0 5.17e-01 98.7% 88.2%
3234731 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.62 47.0 4.91e-01 93.3% 95.4%
3885451 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 44.0 4.67e-01 94.7% 86.2%
3986794 639.2.1.1 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › YmgB 0.61 47.0 4.85e-01 80.0% 85.7%
3428929 101.1.1.138 alpha arrays › HTH › HTH › Three-helical HTH › GeBP-like_DBD 0.61 52.0 4.82e-01 97.3% 82.0%
3393794 3922.1.1.211 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DRC7_C 0.61 39.0 3.25e-01 81.3% 36.3%
4927487 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.60 50.0 5.04e-01 97.3% 93.3%
3945334 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 46.0 4.31e-01 100.0% 66.3%
3253767 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.60 48.0 3.81e-01 90.7% 42.6%
5049282 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 48.0 4.72e-01 96.0% 82.4%
4120048 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.60 45.0 3.48e-01 80.0% 38.2%
3629401 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.59 46.0 4.70e-01 86.7% 100.0%
3598088 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.58 46.0 3.99e-01 94.7% 52.3%
3390249 4003.1.1.0 alpha arrays › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins 0.58 42.0 4.20e-01 93.3% 77.3%
4569058 105.1.1.8 alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › Kri1 0.58 43.0 3.66e-01 78.7% 71.7%
3833019 101.1.1.138 alpha arrays › HTH › HTH › Three-helical HTH › GeBP-like_DBD 0.57 48.0 4.41e-01 98.7% 72.4%
3937102 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.57 49.0 3.78e-01 100.0% 54.4%
3675882 2007.2.3.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.56 45.0 3.35e-01 92.0% 54.9%
4019914 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.56 45.0 4.57e-01 90.7% 90.7%
3823610 101.1.10.36 alpha arrays › HTH › HTH › Cyclin-like › MOM1 0.55 47.0 4.14e-01 100.0% 94.2%
4970290 633.10.1.43 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › FIMAH 0.54 44.0 4.24e-01 86.7% 100.0%
3966057 4239.2.1.1 alpha arrays › DNA polymerase III theta subunit-like › LasR-specific antiactivator (QslA) › LasR-specific antiactivator (QslA) › QslA 0.53 45.0 4.28e-01 100.0% 88.4%
5058632 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.52 38.0 3.97e-01 80.0% 81.4%
5014267 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.51 38.0 4.00e-01 84.0% 85.7%
3335062 101.1.10.36 alpha arrays › HTH › HTH › Cyclin-like › MOM1 0.51 42.0 3.72e-01 100.0% 84.8%
5061332 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.51 38.0 3.71e-01 80.0% 72.5%
D2 medium residues 8-82
PDB