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KF381361.1__AGR47637.2__SmphiM12_005__00003

Bact-Vir

KF381361.1__AGR47637.2__SmphiM12_005__00003

Identity

Accession:
KF381361 ↗
Kingdom:
phage

Quality

94.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Emdodecavirus› Sinorhizobium_phage_phiM12

TaxID: 1357423

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-65
PDB
Domain cluster: rep: LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00231__D20-80
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 5.02e-01 88.9% 82.3%
3nswA00 2.40.50.780 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 51.0 4.34e-01 90.5% 84.0%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.57 46.0 4.69e-01 96.8% 96.7%
5eiqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.67e-01 82.5% 89.0%
3k50A02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 43.0 3.70e-01 92.1% 95.0%
4hd5A01 2.60.40.3760 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.49e-01 85.7% 88.7%
4q66A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 37.0 3.39e-01 82.5% 84.8%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3588727 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 55.0 5.36e-01 87.3% 82.9%
3271407 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 55.0 5.00e-01 90.5% 72.9%
4967267 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 50.0 3.91e-01 87.3% 92.5%
3605922 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 52.0 4.49e-01 93.7% 83.0%
3187350 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 52.0 5.14e-01 90.5% 92.3%
3827886 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.60 51.0 4.76e-01 95.2% 87.5%
3506126 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 48.0 4.01e-01 90.5% 90.4%
3489469 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 47.0 3.98e-01 87.3% 81.0%
3678872 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.59 51.0 4.81e-01 95.2% 92.0%
5012781 2.1.1.51 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 0.57 44.0 3.53e-01 85.7% 93.1%
3287118 7035.1.1.0 ↗ beta barrels › Cuben fold of PcncAAAD › Cuben fold of PcncAAAD › Cuben fold of PcncAAAD 0.55 40.0 3.38e-01 79.4% 93.6%
2323917 12.6.1.4 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro127M 0.54 38.0 3.27e-01 73.0% 80.4%
3706000 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.54 43.0 4.12e-01 92.1% 94.7%
3617025 220.1.1.56 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH 0.52 42.0 3.36e-01 88.9% 67.2%
3905199 11.1.1.946 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2, Ig_3 0.52 38.0 2.92e-01 81.0% 45.0%
4193996 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.51 41.0 3.49e-01 92.1% 76.4%
3486056 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 37.0 2.86e-01 79.4% 36.4%
3594618 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.51 37.0 2.78e-01 81.0% 89.7%
4441682 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.50 41.0 2.66e-01 96.8% 59.2%