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KF554508.2__AID50455.1__X__00020
Bact-VirKF554508.2__AID50455.1__X__00020
Identity
- Accession:
- KF554508 ↗
- Kingdom:
- phage
Quality
71.0
mean pLDDT
Taxonomy
TaxID: 1391188
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-49
Domain cluster:
rep: NC_012530.1__YP_002790789.1__lb338_phage_110__00110__D7-53
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24040.2 best | DUF7349 | 42.1 | 7.40e-11 | 91.7% | 88.0% |
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vn5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.74 | 59.0 | 5.31e-01 | 91.7% | 98.6% |
| 1bliA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.73 | 54.0 | 4.49e-01 | 81.2% | 51.7% |
| 3dhpA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.71 | 52.0 | 4.24e-01 | 81.2% | 55.9% |
| 2hjqA01 | 3.40.5.20 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain | 0.70 | 53.0 | 5.39e-01 | 100.0% | 93.5% |
| 2aaaA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.69 | 50.0 | 3.99e-01 | 81.2% | 42.2% |
| 1ji8A01 | 3.30.1420.10 | Alpha Beta › 2-Layer Sandwich › Dissimilatory Siroheme-sulfite Reductase; Chain: A; domain 1 › DsrC protein, N-terminal domain | 0.68 | 53.0 | 5.42e-01 | 87.5% | 91.5% |
| 2e9xB01 | 3.40.5.50 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.65 | 54.0 | 4.95e-01 | 100.0% | 71.2% |
| 4yokA01 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.64 | 51.0 | 4.19e-01 | 91.7% | 92.6% |
| 4h63Q04 | 3.90.1150.120 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.64 | 39.0 | 2.94e-01 | 91.7% | 22.4% |
| 4g7nA02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.63 | 44.0 | 3.62e-01 | 77.1% | 75.3% |
| 4fxtA01 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.63 | 50.0 | 4.24e-01 | 91.7% | 94.2% |
| 2d0bA01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.63 | 54.0 | 4.47e-01 | 100.0% | 75.3% |
| 6ixyA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 52.0 | 3.92e-01 | 100.0% | 95.6% |
| 3ztvA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.62 | 47.0 | 2.90e-01 | 83.3% | 88.0% |
| 1aisA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.62 | 50.0 | 4.31e-01 | 100.0% | 97.7% |
| 3mn8B02 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.61 | 50.0 | 4.32e-01 | 97.9% | 91.6% |
| 2h0eB00 | 2.60.40.180 | Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain | 0.60 | 48.0 | 3.87e-01 | 97.9% | 97.3% |
| 2h6uA00 | 2.60.40.180 | Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain | 0.60 | 49.0 | 3.87e-01 | 97.9% | 99.1% |
| 3i45A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 46.0 | 3.06e-01 | 85.4% | 57.6% |
| 3vxvA00 | 3.30.890.10 | Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A | 0.59 | 34.0 | 3.10e-01 | 95.8% | 38.5% |
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.58 | 47.0 | 4.26e-01 | 97.9% | 94.4% |
| 1ds1A00 | 3.60.130.10 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like | 0.58 | 42.0 | 2.64e-01 | 83.3% | 35.6% |
| 3n0xA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 43.0 | 2.89e-01 | 85.4% | 55.6% |
| 4xotA03 | 2.40.30.250 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.57 | 43.0 | 3.70e-01 | 87.5% | 65.1% |
| 4n0qA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 44.0 | 3.24e-01 | 89.6% | 74.1% |
| 4evqA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 43.0 | 2.88e-01 | 85.4% | 55.4% |
| 4zpjA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 42.0 | 2.89e-01 | 85.4% | 57.0% |
| 4rv5A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 41.0 | 2.80e-01 | 85.4% | 53.6% |
| 1bwzA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.55 | 39.0 | 3.06e-01 | 81.2% | 76.4% |
| 3td9A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 46.0 | 3.29e-01 | 97.9% | 78.1% |
| 3ey7A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.54 | 33.0 | 2.52e-01 | 81.2% | 21.5% |
| 6j7cA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.54 | 39.0 | 2.76e-01 | 79.2% | 59.0% |
| 1usgA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 44.0 | 3.24e-01 | 97.9% | 81.9% |
| 3jr1A02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.53 | 41.0 | 2.82e-01 | 91.7% | 70.6% |
| 1l4dB00 | 3.10.20.180 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 41.0 | 3.20e-01 | 89.6% | 62.5% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4127864 | 12.1.1.3 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C | 0.74 | 55.0 | 4.49e-01 | 81.2% | 46.7% |
| 3199788 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.73 | 54.0 | 4.27e-01 | 81.2% | 45.0% |
| 4981952 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.73 | 60.0 | 5.94e-01 | 100.0% | 90.0% |
| 4934987 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.70 | 53.0 | 5.50e-01 | 95.8% | 91.1% |
| 4946969 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.68 | 59.0 | 5.87e-01 | 100.0% | 96.0% |
| 4932061 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.68 | 52.0 | 5.32e-01 | 97.9% | 97.8% |
| 4509443 | 4076.3.1.8 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N | 0.66 | 53.0 | 4.92e-01 | 97.9% | 70.8% |
| 4021638 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.66 | 54.0 | 5.04e-01 | 100.0% | 72.3% |
| 3237590 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.65 | 56.0 | 4.35e-01 | 97.9% | 93.3% |
| 3233137 | 11.1.4.71 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO1-like_7th | 0.64 | 52.0 | 4.73e-01 | 95.8% | 95.7% |
| 3416069 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.64 | 49.0 | 4.50e-01 | 91.7% | 91.4% |
| 5036241 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.64 | 54.0 | 4.94e-01 | 100.0% | 72.3% |
| 3060783 | 4076.3.1.8 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N | 0.64 | 53.0 | 5.00e-01 | 100.0% | 77.4% |
| 4979454 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 49.0 | 3.85e-01 | 87.5% | 64.5% |
| 4028983 | 898.1.1.1 ↗ | a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 | 0.63 | 52.0 | 3.95e-01 | 100.0% | 58.3% |
| 4446499 | 331.1.1.6 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 | 0.62 | 49.0 | 4.41e-01 | 100.0% | 83.7% |
| 5051120 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.62 | 50.0 | 3.25e-01 | 100.0% | 84.9% |
| 4291660 | 4076.3.1.7 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › DUF2635 | 0.62 | 48.0 | 4.82e-01 | 100.0% | 91.8% |
| 3493703 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.61 | 37.0 | 3.87e-01 | 97.9% | 64.4% |
| 4535773 | 11.1.4.126 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Cna_B, SpaA | 0.61 | 50.0 | 3.38e-01 | 93.8% | 47.7% |
| 4155258 | 11.1.4.115 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF6795 | 0.61 | 50.0 | 4.13e-01 | 97.9% | 94.7% |
| 5070897 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.60 | 48.0 | 4.27e-01 | 95.8% | 97.3% |
| 4683204 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.59 | 41.0 | 3.25e-01 | 72.9% | 76.2% |
| 4864430 | 3740.1.1.1 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_N,FrhB_FdhB_C | 0.59 | 47.0 | 3.11e-01 | 100.0% | 85.6% |
| 5022727 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 37.0 | 2.71e-01 | 91.7% | 20.7% |
| 5048657 | 213.3.1.1 ↗ | a+b three layers › Nat/Ivy › Uncharacterized conserved protein MK0968 › Uncharacterized conserved protein MK0968 › DUF424 | 0.58 | 39.0 | 3.17e-01 | 70.8% | 84.7% |
| 4990102 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.58 | 36.0 | 3.69e-01 | 95.8% | 57.8% |
| 3631118 | 807.1.1.0 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) | 0.56 | 44.0 | 3.50e-01 | 93.8% | 73.9% |
| 3792259 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.54 | 41.0 | 2.77e-01 | 87.5% | 49.5% |
| 5029489 | 213.3.1.1 ↗ | a+b three layers › Nat/Ivy › Uncharacterized conserved protein MK0968 › Uncharacterized conserved protein MK0968 › DUF424 | 0.54 | 40.0 | 3.28e-01 | 81.2% | 80.0% |
| 4972029 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.54 | 38.0 | 2.73e-01 | 81.2% | 82.4% |
| 3898743 | 11.12.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD | 0.53 | 44.0 | 2.97e-01 | 100.0% | 47.9% |
| 5056777 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 41.0 | 3.59e-01 | 95.8% | 100.0% |
| 4058754 | 2003.1.5.38 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › SAM_MT | 0.50 | 39.0 | 2.54e-01 | 91.7% | 29.4% |