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KF589919.1__AGW43771.1__phiRS7_0035__00035

Bact-Vir

KF589919.1__AGW43771.1__phiRS7_0035__00035

Identity

Accession:
KF589919 ↗
Kingdom:
phage

Quality

93.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 74-154
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10083.15 best DUF2321 74.0 1.60e-20 98.8% 51.3%
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x9bA00 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.70 44.0 5.16e-01 71.6% 98.1%
3n3dB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.70 57.0 3.85e-01 91.4% 85.9%
4kjmA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.67 43.0 5.11e-01 70.4% 96.4%
4exjA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.65 49.0 4.33e-01 81.5% 74.4%
5eroA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.65 52.0 3.60e-01 91.4% 92.7%
1rrmA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.64 48.0 3.65e-01 80.2% 67.0%
1kxpD04 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.64 43.0 4.48e-01 100.0% 74.0%
6bldA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.64 50.0 3.17e-01 84.0% 37.9%
4okmD00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.63 53.0 3.57e-01 92.6% 69.8%
2mx8A01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.63 55.0 4.98e-01 100.0% 96.5%
3himA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 46.0 3.61e-01 81.5% 60.5%
3frrA00 1.20.1260.60 Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 0.62 52.0 4.11e-01 98.8% 70.4%
1dl2A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.61 44.0 2.76e-01 77.8% 29.0%
2yk0A03 1.20.58.1930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 44.0 3.24e-01 76.5% 60.4%
5oklA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.60 45.0 4.25e-01 81.5% 95.0%
1pn9B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 44.0 3.87e-01 81.5% 78.5%
4dvyP01 1.10.357.130 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.59 51.0 3.91e-01 98.8% 98.0%
3d7iB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.59 42.0 3.99e-01 75.3% 66.3%
2mgyA01 1.20.1260.100 Mainly Alpha › Up-down Bundle › Ferritin › TspO/MBR protein 0.59 48.0 3.97e-01 93.8% 65.6%
3rx6A00 1.20.58.1090 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phage polarity suppression protein monomer 0.59 41.0 3.17e-01 72.8% 85.6%
3bvxA02 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.58 40.0 3.65e-01 71.6% 74.8%
4mo7A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 43.0 3.64e-01 79.0% 79.6%
1w36C04 1.10.486.10 Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 0.58 47.0 3.53e-01 90.1% 56.5%
2rg8A00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 50.0 4.09e-01 96.3% 70.7%
1dgfA03 1.20.1370.60 Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › 0.57 50.0 4.46e-01 96.3% 93.9%
2vixA02 1.10.150.630 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.57 47.0 4.60e-01 95.1% 100.0%
5lweA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.57 45.0 3.21e-01 88.9% 82.9%
4a5dB00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.57 48.0 3.48e-01 93.8% 62.9%
3zssA02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.57 38.0 3.92e-01 70.4% 73.4%
2p6vA00 1.20.120.1110 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › TAFH/NHR1 domain 0.56 43.0 4.08e-01 91.4% 69.1%
3f2bA07 6.10.140.1510 Special › Helix non-globular › Helix Hairpins › 0.56 46.0 4.52e-01 90.1% 97.7%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 50.0 4.23e-01 98.8% 81.8%
1ciiA03 1.10.490.30 Mainly Alpha › Orthogonal Bundle › Globin-like › Colicin 0.55 47.0 3.92e-01 100.0% 64.3%
2cmrA00 1.20.58.1860 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 44.0 3.50e-01 92.6% 73.4%
3axjB01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.55 41.0 3.39e-01 80.2% 61.3%
8an5A01 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.55 47.0 3.69e-01 100.0% 60.4%
5fhiA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 44.0 3.72e-01 87.7% 72.7%
2kvcA01 1.10.150.430 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF3349, helical bundle 0.55 37.0 3.71e-01 90.1% 65.9%
1fc3B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 4.08e-01 88.9% 99.0%
4p9tA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.54 39.0 3.53e-01 77.8% 74.2%
4unfA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.54 42.0 3.73e-01 84.0% 64.1%
1qsaA01 1.25.20.10 Mainly Alpha › Alpha Horseshoe › 70-kda Soluble Lytic Transglycosylase; domain 1 › Bacterial muramidases 0.53 43.0 2.87e-01 95.1% 20.7%
2hyjA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 43.0 3.62e-01 91.4% 73.5%
1gq2A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 46.0 3.18e-01 100.0% 51.0%
5xe7A01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.53 43.0 3.64e-01 92.6% 81.7%
4bwrA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 43.0 2.71e-01 91.4% 18.0%
6tkyA03 1.20.58.740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C 0.52 38.0 3.46e-01 80.2% 84.4%
2fm8C01 1.10.4150.10 Mainly Alpha › Orthogonal Bundle › SipA N-terminal domain-like › SipA N-terminal domain-like 0.52 43.0 3.32e-01 93.8% 80.8%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.52 41.0 4.18e-01 88.9% 93.8%
4a4kA01 1.20.1500.20 Mainly Alpha › Up-down Bundle › YheA-like fold › 0.51 36.0 3.23e-01 72.8% 71.7%
3fvvA02 1.20.1440.100 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › SG protein - dephosphorylation function 0.51 37.0 3.80e-01 76.5% 96.0%
7utzR02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 44.0 3.11e-01 98.8% 57.5%
1jr8A00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.51 40.0 3.78e-01 100.0% 68.6%
1oqcA00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.50 40.0 3.65e-01 100.0% 64.3%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4938198 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.70 53.0 5.19e-01 90.1% 73.3%
3853189 109.4.1.910 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_MROH2B_C 0.70 51.0 3.42e-01 77.8% 24.1%
3738945 509.1.1.9 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH_ZNF598 0.69 60.0 5.93e-01 96.3% 91.8%
3619983 109.27.1.1 alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BACK 0.68 49.0 4.42e-01 75.3% 58.2%
5059586 181.1.1.0 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.68 56.0 5.68e-01 90.1% 93.7%
3192660 509.1.1.9 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH_ZNF598 0.66 58.0 5.53e-01 100.0% 90.5%
3578718 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.66 51.0 4.87e-01 84.0% 78.9%
3794915 3065.1.1.1 alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › ANIS5_cation-bd 0.66 51.0 4.33e-01 84.0% 55.6%
4011370 509.1.1.0 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.66 57.0 5.50e-01 100.0% 90.5%
3629201 3065.1.1.0 alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins 0.66 51.0 4.42e-01 85.2% 56.2%
3588019 633.31.1.0 alpha bundles › Bromodomain-like › Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase › Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase 0.65 51.0 5.44e-01 93.8% 100.0%
3617417 3065.1.1.0 alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins 0.65 49.0 4.21e-01 81.5% 54.6%
136829 109.1.1.6 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_2 0.63 46.0 4.05e-01 79.0% 71.9%
3623002 1008.1.1.0 alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain 0.63 48.0 4.51e-01 84.0% 70.5%
3479515 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.63 44.0 3.88e-01 74.1% 82.4%
3467833 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.62 43.0 3.23e-01 74.1% 82.7%
4937823 3558.1.1.0 alpha arrays › HSDR subunit helical domain › HSDR subunit helical domain › HSDR subunit helical domain 0.60 54.0 5.07e-01 100.0% 99.0%
3016249 532.2.1.0 alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains 0.60 51.0 4.83e-01 97.5% 97.0%
3785210 109.4.1.2693 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27739, PF27740 0.59 51.0 3.16e-01 97.5% 31.3%
3180671 109.4.1.299 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ltn1_1st 0.59 51.0 3.33e-01 100.0% 33.8%
5001838 140.1.1.14 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e 0.58 42.0 3.50e-01 77.8% 47.3%
3633437 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.58 46.0 3.44e-01 90.1% 89.8%
3592779 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.55 47.0 4.56e-01 96.3% 97.8%
3699911 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.55 39.0 3.38e-01 84.0% 45.9%
4034571 632.19.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.54 43.0 4.47e-01 98.8% 89.3%
3509286 102.1.1.85 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_KIDINS220 0.53 43.0 4.19e-01 90.1% 83.3%
3480706 4218.1.1.1 alpha bundles › TAFH domain-like › TAFH domain-like › TAFH domain-like › TAFH 0.53 41.0 4.10e-01 90.1% 83.5%
3908430 109.27.1.1 alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BACK 0.53 43.0 4.13e-01 91.4% 90.5%
3412844 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.53 46.0 2.98e-01 97.5% 30.6%
3268640 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.52 32.0 3.65e-01 75.3% 83.3%
3216679 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.52 41.0 4.24e-01 87.7% 97.3%
3720601 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.51 43.0 4.31e-01 100.0% 90.6%
3644079 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 40.0 3.31e-01 91.4% 52.7%
3210081 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.50 42.0 2.83e-01 100.0% 60.5%
D2 medium residues 1-71
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10083.15 best DUF2321 61.0 1.60e-16 97.2% 47.4%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4241211 375.1.1.204 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PolC_DP2_central 0.68 39.0 3.44e-01 97.2% 38.1%
5050748 375.1.1.204 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PolC_DP2_central 0.67 41.0 3.62e-01 90.1% 42.2%
3407405 376.1.1.70 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Sina_RING 0.61 39.0 4.01e-01 77.5% 67.1%
4079564 2005.1.1.40 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.59 47.0 3.06e-01 88.7% 37.8%
3214657 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.55 36.0 3.75e-01 80.3% 72.3%
2988967 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.53 37.0 2.98e-01 77.5% 54.7%