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KF589919.1__AGW43796.1__phiRS7_0060__00060

Bact-Vir

KF589919.1__AGW43796.1__phiRS7_0060__00060

Identity

Accession:
KF589919 ↗
Kingdom:
phage

Quality

81.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Staphylococcus_phage_phiRS7

TaxID: 1403390

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-74
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sfnA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 37.0 2.52e-01 100.0% 14.7%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 50.0 5.26e-01 100.0% 91.4%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 47.0 5.08e-01 100.0% 96.4%
4flnA02 3.20.190.20 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › 0.63 54.0 4.23e-01 100.0% 87.5%
3mr0A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 48.0 4.09e-01 83.3% 80.9%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 4.56e-01 98.5% 80.6%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.62 40.0 4.40e-01 100.0% 88.0%
2vlgC00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 49.0 4.30e-01 90.9% 82.4%
3rtyB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 46.0 4.00e-01 86.4% 86.2%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 4.21e-01 100.0% 68.8%
2fqpA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 35.0 3.18e-01 100.0% 42.1%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.57 36.0 3.43e-01 89.4% 53.2%
1d8cA03 1.20.1220.12 Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III 0.57 41.0 3.23e-01 75.8% 40.7%
2r6fA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.57 42.0 4.11e-01 80.3% 97.2%
6focH01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.56 47.0 4.14e-01 100.0% 67.6%
1h8eH00 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.55 46.0 4.32e-01 100.0% 82.0%
2hlyA00 3.10.550.10 Alpha Beta › Roll › Atu2299-like › Hypothetical protein Atu2299 0.55 42.0 3.07e-01 84.8% 88.3%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.55 39.0 4.00e-01 97.0% 77.3%
2e5yA01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.54 46.0 4.25e-01 100.0% 80.7%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.68e-01 100.0% 72.7%
1c0gA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.53 44.0 4.04e-01 97.0% 85.9%
1awjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 42.0 4.01e-01 95.5% 75.3%
6efaA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 39.0 3.79e-01 83.3% 94.9%
5dn6I00 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.53 41.0 4.02e-01 90.9% 86.7%
6nwmA01 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.52 37.0 2.90e-01 75.8% 96.8%
1ultB01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.52 39.0 2.43e-01 81.8% 36.5%
7z8iC01 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.52 43.0 4.11e-01 97.0% 92.6%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.52 38.0 2.71e-01 81.8% 53.6%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.52 35.0 3.87e-01 98.5% 97.9%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.60e-01 100.0% 73.5%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.51 36.0 3.79e-01 89.4% 91.1%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.51 39.0 3.97e-01 89.4% 89.1%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.51 37.0 3.90e-01 87.9% 92.9%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.50 39.0 3.04e-01 87.9% 90.2%
2askA00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.50 39.0 3.43e-01 86.4% 81.2%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5017559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 68.0 6.88e-01 98.5% 100.0%
4147528 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.71 62.0 6.09e-01 100.0% 100.0%
3959440 4.1.1.180 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3107 0.71 60.0 6.07e-01 98.5% 98.5%
4368811 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.68 47.0 5.04e-01 100.0% 87.3%
4400642 4.1.1.257 ↗ beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.67 46.0 4.29e-01 98.5% 56.5%
3968342 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.66 48.0 5.16e-01 98.5% 96.2%
4540843 4.1.1.434 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2642 0.66 45.0 4.60e-01 100.0% 73.8%
4994897 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 53.0 4.16e-01 87.9% 54.1%
3803377 7.1.1.7 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.65 54.0 4.43e-01 95.5% 90.0%
3808127 7.1.1.7 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.65 55.0 4.45e-01 98.5% 92.6%
5002601 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.64 44.0 4.57e-01 97.0% 79.7%
5028741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 46.0 4.92e-01 100.0% 90.9%
4139090 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.64 45.0 4.87e-01 100.0% 89.1%
3645831 7.1.1.7 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.64 55.0 4.28e-01 100.0% 91.6%
5027750 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 46.0 4.85e-01 100.0% 92.7%
3985490 192.2.1.5 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 0.64 45.0 3.73e-01 75.8% 52.4%
3373766 7.1.1.7 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.63 54.0 4.27e-01 100.0% 88.7%
5029405 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.63 44.0 4.79e-01 100.0% 89.1%
5000741 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.63 46.0 4.66e-01 100.0% 78.5%
5056826 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.63 46.0 4.68e-01 100.0% 80.0%
4044269 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.63 45.0 4.47e-01 100.0% 72.9%
3290899 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.61 43.0 4.30e-01 100.0% 71.4%
5053906 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.61 45.0 4.73e-01 100.0% 88.3%
4971470 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.61 45.0 4.36e-01 100.0% 70.7%
5080336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 44.0 4.49e-01 100.0% 81.2%
5050320 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.60 45.0 4.34e-01 100.0% 70.7%
4277213 4.1.1.431 ↗ beta barrels › SH3 › SH3 › SH3 › PF27152 0.60 41.0 4.09e-01 98.5% 68.6%
4142364 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.60 39.0 3.96e-01 97.0% 67.7%
3422531 7.1.1.7 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.60 44.0 4.32e-01 81.8% 94.7%
3968526 2.1.1.145 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF2835 0.59 42.0 4.06e-01 74.2% 68.5%
2697704 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.59 39.0 3.95e-01 100.0% 69.2%
4979291 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.59 44.0 4.23e-01 100.0% 70.7%
4226849 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 43.0 4.11e-01 100.0% 66.3%
5063311 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.58 37.0 4.17e-01 92.4% 93.3%
4071824 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.58 45.0 4.36e-01 100.0% 74.7%
4093911 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 43.0 4.15e-01 100.0% 70.7%
4252954 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 43.0 4.23e-01 100.0% 77.1%
5042330 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.57 46.0 4.56e-01 89.4% 91.4%
4554867 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 42.0 4.23e-01 100.0% 81.5%
4157193 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 41.0 4.11e-01 100.0% 75.7%
3278801 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.56 37.0 3.75e-01 97.0% 69.2%
4158712 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.56 41.0 4.06e-01 100.0% 75.7%
4982354 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.56 44.0 4.42e-01 100.0% 89.2%
5048974 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 46.0 3.91e-01 100.0% 56.4%
3939311 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.55 38.0 3.34e-01 100.0% 45.5%
3482761 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 44.0 2.85e-01 95.5% 20.5%
4646939 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.54 44.0 3.15e-01 97.0% 33.2%
3272300 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.54 44.0 2.82e-01 95.5% 20.0%
3954254 4.1.1.387 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv0428c 0.54 41.0 4.15e-01 100.0% 86.2%
3939646 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 38.0 2.21e-01 80.3% 51.2%
3301960 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.53 45.0 3.15e-01 100.0% 50.0%
5053225 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 45.0 3.97e-01 100.0% 68.0%
3686916 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.52 44.0 3.18e-01 100.0% 58.6%
3931904 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.52 33.0 3.55e-01 97.0% 78.2%
4024913 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 34.0 3.50e-01 97.0% 70.8%
3948330 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.51 36.0 3.15e-01 77.3% 73.6%
3684909 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.51 32.0 3.43e-01 98.5% 74.5%
3781711 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.51 32.0 3.43e-01 98.5% 76.4%
5059830 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.51 45.0 4.05e-01 100.0% 75.6%