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KF598865.1__AGY46503.1__PP_36__00036
Bact-VirKF598865.1__AGY46503.1__PP_36__00036
Identity
- Accession:
- KF598865 ↗
- Kingdom:
- phage
Quality
91.5
mean pLDDT
Taxonomy
TaxID: 434346
Cluster
View cluster (22 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-90
Domain cluster:
representative
CATH (50)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5a72A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.84 | 80.0 | 6.45e-01 | 100.0% | 58.0% |
| 3ko2A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.83 | 78.0 | 6.28e-01 | 100.0% | 57.1% |
| 4efjA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.81 | 73.0 | 6.22e-01 | 100.0% | 62.1% |
| 1af5A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.81 | 74.0 | 6.52e-01 | 100.0% | 69.8% |
| 4yhxA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.81 | 76.0 | 6.38e-01 | 100.0% | 63.8% |
| 4lq0A02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.80 | 75.0 | 6.23e-01 | 100.0% | 62.6% |
| 2ex5A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.80 | 73.0 | 5.51e-01 | 100.0% | 46.4% |
| 4lq0A01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.79 | 73.0 | 6.18e-01 | 100.0% | 66.0% |
| 3e54A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.79 | 72.0 | 5.90e-01 | 100.0% | 59.1% |
| 2ab5B01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.78 | 73.0 | 6.41e-01 | 100.0% | 71.9% |
| 4yisB02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.78 | 68.0 | 5.84e-01 | 100.0% | 61.8% |
| 1dq3A03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.74 | 65.0 | 6.64e-01 | 98.9% | 98.9% |
| 3icyA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.70 | 35.0 | 3.19e-01 | 73.3% | 36.4% |
| 1b24A01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.69 | 61.0 | 6.05e-01 | 100.0% | 97.9% |
| 1b7yA00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.66 | 56.0 | 3.99e-01 | 92.2% | 81.5% |
| 5mghA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.61 | 53.0 | 3.70e-01 | 96.7% | 84.0% |
| 6kjuB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.61 | 32.0 | 2.94e-01 | 74.4% | 37.6% |
| 5suhA02 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.61 | 51.0 | 4.89e-01 | 90.0% | 86.4% |
| 5lt5A02 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.61 | 51.0 | 4.93e-01 | 90.0% | 87.3% |
| 2gj3A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.61 | 32.0 | 2.92e-01 | 75.6% | 38.7% |
| 6gmhK00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.60 | 46.0 | 4.26e-01 | 85.6% | 63.5% |
| 5xogK00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.60 | 46.0 | 4.26e-01 | 85.6% | 64.6% |
| 3mr0A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.60 | 33.0 | 3.09e-01 | 75.6% | 42.7% |
| 2w7vA00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.60 | 43.0 | 4.52e-01 | 84.4% | 84.1% |
| 4aybL00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.59 | 44.0 | 4.44e-01 | 87.8% | 78.0% |
| 6ya6A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.59 | 42.0 | 4.10e-01 | 74.4% | 71.4% |
| 3i87A02 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.58 | 47.0 | 4.64e-01 | 87.8% | 87.8% |
| 2b02A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 32.0 | 3.08e-01 | 76.7% | 45.2% |
| 4ozjA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 41.0 | 3.90e-01 | 77.8% | 63.5% |
| 3wy7D01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.57 | 42.0 | 3.85e-01 | 77.8% | 85.8% |
| 4mamB03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.57 | 45.0 | 3.57e-01 | 85.6% | 79.3% |
| 2rrnA01 | 3.30.70.2040 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 37.0 | 3.85e-01 | 75.6% | 72.3% |
| 3hluA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 39.0 | 4.28e-01 | 81.1% | 90.4% |
| 3kulA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 42.0 | 4.25e-01 | 83.3% | 82.0% |
| 5hl8C00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.55 | 40.0 | 4.18e-01 | 84.4% | 86.1% |
| 6ruiK00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.55 | 44.0 | 4.26e-01 | 87.8% | 76.7% |
| 3p96A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 36.0 | 3.77e-01 | 78.9% | 72.6% |
| 2c4xA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 47.0 | 3.95e-01 | 95.6% | 95.5% |
| 4k7rA02 | 2.20.200.10 | Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.54 | 33.0 | 3.47e-01 | 83.3% | 70.1% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.53 | 45.0 | 3.54e-01 | 97.8% | 90.0% |
| 2gukA00 | 3.30.2190.10 | Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like | 0.53 | 37.0 | 3.50e-01 | 81.1% | 59.5% |
| 4h5bA00 | 3.30.1460.70 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.52 | 44.0 | 3.76e-01 | 94.4% | 73.7% |
| 2n8lA00 | 3.30.310.210 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.52 | 41.0 | 3.31e-01 | 87.8% | 77.5% |
| 7a6pB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 36.0 | 3.12e-01 | 71.1% | 79.7% |
| 1sc6A03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.52 | 37.0 | 3.82e-01 | 80.0% | 81.7% |
| 3b8oA01 | 3.30.1890.10 | Alpha Beta › 2-Layer Sandwich › Bacterial polysaccharide co-polymerase-like › FepE-like | 0.51 | 37.0 | 2.81e-01 | 75.6% | 75.9% |
| 2jzxA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.51 | 35.0 | 3.69e-01 | 71.1% | 92.4% |
| 2nraC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 40.0 | 3.92e-01 | 86.7% | 100.0% |
| 1zhhB01 | 3.30.450.220 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain | 0.50 | 36.0 | 3.08e-01 | 76.7% | 63.1% |
| 4m1xD00 | 3.30.1360.240 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.50 | 37.0 | 4.06e-01 | 84.4% | 98.6% |
ECOD (74)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3206671 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.85 | 78.0 | 6.75e-01 | 100.0% | 66.9% |
| 5023686 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.85 | 78.0 | 6.77e-01 | 100.0% | 67.7% |
| 135378 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.84 | 79.0 | 6.19e-01 | 100.0% | 52.9% |
| 3173026 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.84 | 78.0 | 6.14e-01 | 100.0% | 66.3% |
| 4653164 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.84 | 78.0 | 6.70e-01 | 100.0% | 71.1% |
| 3206013 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.83 | 79.0 | 6.62e-01 | 100.0% | 64.3% |
| 3178011 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.83 | 77.0 | 6.56e-01 | 100.0% | 65.0% |
| 3249652 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.83 | 77.0 | 6.57e-01 | 100.0% | 65.9% |
| 3738330 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.82 | 76.0 | 6.44e-01 | 100.0% | 63.6% |
| 4237486 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.82 | 72.0 | 5.88e-01 | 100.0% | 54.2% |
| 4536899 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.82 | 76.0 | 6.38e-01 | 100.0% | 68.3% |
| 1787814 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.81 | 76.0 | 6.20e-01 | 100.0% | 58.8% |
| 4418705 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.81 | 73.0 | 5.98e-01 | 100.0% | 56.1% |
| 4115001 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.81 | 74.0 | 6.42e-01 | 100.0% | 67.7% |
| 4155058 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.80 | 74.0 | 6.61e-01 | 100.0% | 73.3% |
| 3738339 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.80 | 74.0 | 6.51e-01 | 100.0% | 71.2% |
| 160625 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.80 | 73.0 | 5.51e-01 | 100.0% | 46.4% |
| 4395233 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.80 | 73.0 | 6.09e-01 | 100.0% | 60.7% |
| 5012702 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.79 | 73.0 | 6.71e-01 | 100.0% | 82.6% |
| 4276586 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.79 | 74.0 | 6.61e-01 | 100.0% | 75.8% |
| 169883 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.79 | 72.0 | 5.90e-01 | 100.0% | 59.1% |
| 5551 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.78 | 73.0 | 6.34e-01 | 100.0% | 71.3% |
| 4282335 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.78 | 71.0 | 5.85e-01 | 98.9% | 58.1% |
| 4962526 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.77 | 71.0 | 5.71e-01 | 100.0% | 55.2% |
| 5027649 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.76 | 70.0 | 6.32e-01 | 100.0% | 80.0% |
| 4934295 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.75 | 68.0 | 6.63e-01 | 100.0% | 90.0% |
| 4937053 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.73 | 67.0 | 6.48e-01 | 100.0% | 91.0% |
| 5027605 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.68 | 55.0 | 5.62e-01 | 100.0% | 92.9% |
| 3950275 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.66 | 54.0 | 5.56e-01 | 94.4% | 92.9% |
| 4994470 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.65 | 42.0 | 4.52e-01 | 78.9% | 78.7% |
| 4982133 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.62 | 39.0 | 4.11e-01 | 72.2% | 71.2% |
| 4277035 | 310.3.1.4 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › GspL_C | 0.60 | 44.0 | 4.60e-01 | 85.6% | 86.3% |
| 5066425 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.60 | 38.0 | 4.04e-01 | 76.7% | 72.5% |
| 3970739 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 46.0 | 3.86e-01 | 87.8% | 47.5% |
| 4447416 | 304.8.1.53 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GlnD_5th | 0.59 | 46.0 | 3.71e-01 | 87.8% | 42.2% |
| 3661475 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 44.0 | 3.66e-01 | 86.7% | 44.2% |
| 4223968 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.59 | 37.0 | 3.92e-01 | 78.9% | 71.2% |
| 4935067 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.59 | 39.0 | 4.02e-01 | 80.0% | 71.8% |
| 3702916 | 5104.1.1.3 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 | 0.58 | 49.0 | 4.19e-01 | 95.6% | 83.3% |
| 3305653 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.58 | 38.0 | 4.19e-01 | 77.8% | 87.1% |
| 4667615 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.57 | 44.0 | 4.02e-01 | 87.8% | 60.8% |
| 3713550 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.57 | 42.0 | 3.72e-01 | 92.2% | 53.8% |
| 4298844 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 44.0 | 4.33e-01 | 88.9% | 80.0% |
| 3462522 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 45.0 | 4.06e-01 | 87.8% | 76.8% |
| 3994072 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.56 | 40.0 | 3.90e-01 | 76.7% | 84.8% |
| 4984611 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.56 | 43.0 | 3.36e-01 | 84.4% | 96.7% |
| 3727608 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.56 | 40.0 | 3.81e-01 | 76.7% | 71.8% |
| 3700554 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.56 | 45.0 | 4.22e-01 | 90.0% | 82.6% |
| 4958905 | 241.5.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › DNA-binding C-terminal domain of the transcription factor MotA › DNA-binding C-terminal domain of the transcription factor MotA › DUF1529 | 0.56 | 48.0 | 4.38e-01 | 94.4% | 87.4% |
| 3308868 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 44.0 | 4.22e-01 | 86.7% | 94.3% |
| 4667438 | 304.8.1.53 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GlnD_5th | 0.56 | 43.0 | 3.68e-01 | 87.8% | 49.7% |
| 3916934 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.55 | 40.0 | 4.16e-01 | 77.8% | 91.8% |
| 3307398 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.55 | 44.0 | 4.17e-01 | 87.8% | 73.6% |
| 3728882 | 7579.1.1.36 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 | 0.55 | 39.0 | 2.64e-01 | 73.3% | 58.5% |
| 3191092 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.55 | 37.0 | 3.71e-01 | 70.0% | 81.1% |
| 4928985 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.55 | 43.0 | 3.72e-01 | 86.7% | 60.7% |
| 4205520 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.54 | 41.0 | 4.19e-01 | 87.8% | 84.4% |
| 3804630 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.54 | 47.0 | 4.27e-01 | 98.9% | 84.8% |
| 5039467 | 304.165.1.0 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 | 0.54 | 46.0 | 3.84e-01 | 98.9% | 82.9% |
| 4021434 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.54 | 36.0 | 3.51e-01 | 70.0% | 75.0% |
| 3645785 | 304.8.1.57 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR_D1 | 0.53 | 42.0 | 4.06e-01 | 88.9% | 75.2% |
| 4961458 | 304.165.1.0 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 | 0.53 | 45.0 | 3.90e-01 | 98.9% | 90.7% |
| 3407748 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.53 | 37.0 | 3.71e-01 | 75.6% | 73.7% |
| 5050129 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.52 | 45.0 | 4.30e-01 | 100.0% | 90.9% |
| 3210232 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.52 | 45.0 | 3.33e-01 | 98.9% | 99.2% |
| 3875444 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.52 | 37.0 | 3.50e-01 | 76.7% | 80.9% |
| 3725623 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.52 | 43.0 | 4.08e-01 | 93.3% | 81.8% |
| 3671608 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 42.0 | 3.98e-01 | 92.2% | 74.5% |
| 4383450 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.51 | 37.0 | 3.45e-01 | 76.7% | 71.3% |
| 3798401 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.51 | 36.0 | 3.69e-01 | 75.6% | 87.8% |
| 4547491 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.51 | 38.0 | 3.61e-01 | 77.8% | 79.0% |
| 3781954 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.51 | 38.0 | 3.76e-01 | 80.0% | 92.6% |
| 3484762 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.51 | 36.0 | 3.68e-01 | 73.3% | 89.4% |
| 3003835 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.50 | 40.0 | 3.78e-01 | 90.0% | 72.5% |
D2
medium
residues 91-141
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pd3A00 | 1.10.287.230 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.88 | 77.0 | 7.62e-01 | 96.1% | 98.1% |
| 4i0xG00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.82 | 72.0 | 6.54e-01 | 98.0% | 89.7% |
| 4gzrC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.82 | 69.0 | 6.49e-01 | 92.2% | 88.5% |
| 4iloA00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.81 | 72.0 | 4.63e-01 | 100.0% | 22.9% |
| 4fvmA06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.80 | 66.0 | 6.79e-01 | 90.2% | 97.9% |
| 2cazC00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.79 | 68.0 | 6.35e-01 | 98.0% | 79.7% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.78 | 67.0 | 5.89e-01 | 100.0% | 80.8% |
| 6tkvA01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.78 | 63.0 | 5.81e-01 | 92.2% | 100.0% |
| 1y6xA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.78 | 62.0 | 5.22e-01 | 88.2% | 55.2% |
| 2bdeA03 | 1.20.58.1160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 65.0 | 5.70e-01 | 96.1% | 87.0% |
| 2kwhA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 62.0 | 6.09e-01 | 92.2% | 94.6% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.77 | 67.0 | 5.88e-01 | 100.0% | 75.6% |
| 2q0oC00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.77 | 67.0 | 5.67e-01 | 100.0% | 68.6% |
| 7tj9A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.76 | 65.0 | 5.12e-01 | 96.1% | 48.1% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.75 | 64.0 | 5.66e-01 | 98.0% | 100.0% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.74 | 66.0 | 5.62e-01 | 100.0% | 69.5% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.74 | 66.0 | 6.06e-01 | 100.0% | 98.5% |
| 1hr5A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.73 | 57.0 | 5.88e-01 | 88.2% | 100.0% |
| 1tjlA00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.73 | 63.0 | 4.61e-01 | 100.0% | 57.2% |
| 2az0B00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.73 | 61.0 | 5.63e-01 | 100.0% | 87.3% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.72 | 48.0 | 3.99e-01 | 70.6% | 39.8% |
| 4dylA02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.72 | 59.0 | 4.97e-01 | 96.1% | 70.2% |
| 3besR03 | 6.10.140.1480 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 58.0 | 5.70e-01 | 92.2% | 85.7% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 59.0 | 5.94e-01 | 98.0% | 100.0% |
| 2gtsA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.70 | 58.0 | 5.20e-01 | 100.0% | 77.9% |
| 4rg8A04 | 1.10.287.1240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 52.0 | 4.95e-01 | 84.3% | 87.1% |
| 6vq6G02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.66 | 57.0 | 3.94e-01 | 100.0% | 65.8% |
| 2etnB01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.65 | 55.0 | 4.91e-01 | 98.0% | 82.9% |
| 1z8sA02 | 6.10.140.360 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 48.0 | 5.06e-01 | 94.1% | 97.6% |
| 2p4vA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.65 | 52.0 | 4.73e-01 | 98.0% | 76.3% |
| 3n5lA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 51.0 | 5.03e-01 | 100.0% | 96.5% |
| 8b6jF01 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.60 | 47.0 | 4.49e-01 | 96.1% | 77.6% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3267567 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.86 | 77.0 | 5.94e-01 | 100.0% | 49.1% |
| 3440543 | 207.1.1.96 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At1g61320_AtMIF1 | 0.83 | 72.0 | 4.13e-01 | 96.1% | 11.6% |
| 3974197 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.83 | 74.0 | 6.32e-01 | 100.0% | 70.0% |
| 3677540 | 2004.1.1.184 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 | 0.81 | 72.0 | 4.34e-01 | 100.0% | 17.3% |
| 3492279 | 4006.1.1.0 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain | 0.81 | 71.0 | 5.48e-01 | 100.0% | 53.0% |
| 4937862 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.80 | 71.0 | 5.53e-01 | 100.0% | 49.1% |
| 3978513 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.80 | 70.0 | 6.09e-01 | 100.0% | 66.3% |
| 3569033 | 3538.1.1.8 ↗ | extended segments › MerF › MerF › MerF › PF28754 | 0.80 | 70.0 | 6.90e-01 | 100.0% | 100.0% |
| 3494198 | 328.7.1.0 ↗ | a+b two layers › IF3-like › Smr domain › Smr domain | 0.80 | 71.0 | 4.73e-01 | 100.0% | 30.5% |
| 3987389 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.79 | 70.0 | 4.00e-01 | 100.0% | 10.7% |
| 3619577 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.79 | 71.0 | 5.87e-01 | 100.0% | 60.0% |
| 3453933 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.79 | 71.0 | 5.47e-01 | 100.0% | 51.8% |
| 4965632 | 192.7.1.85 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › DUF4349 | 0.78 | 70.0 | 6.43e-01 | 100.0% | 83.1% |
| 3302917 | 2004.1.1.505 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11, AAA_30 | 0.78 | 69.0 | 4.20e-01 | 100.0% | 16.4% |
| 4033036 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.78 | 69.0 | 6.08e-01 | 100.0% | 73.3% |
| 4613072 | 101.1.2.721 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2, PF27113 | 0.78 | 69.0 | 4.82e-01 | 100.0% | 34.5% |
| 1106555 | 3812.1.1.1 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE › T3SS_needle_E | 0.78 | 68.0 | 6.26e-01 | 100.0% | 75.8% |
| 3954313 | 150.5.1.52 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PE | 0.78 | 68.0 | 5.57e-01 | 100.0% | 80.0% |
| 3616628 | 1008.1.1.0 ↗ | alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain | 0.77 | 65.0 | 5.71e-01 | 100.0% | 67.5% |
| 5044800 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.76 | 68.0 | 5.83e-01 | 100.0% | 71.2% |
| 4942789 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.75 | 64.0 | 4.76e-01 | 100.0% | 46.4% |
| 3401938 | 3602.1.1.14 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › DUF733 | 0.75 | 65.0 | 5.74e-01 | 100.0% | 85.3% |
| 3916497 | 632.8.1.17 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › Rab_eff_C | 0.74 | 64.0 | 4.88e-01 | 100.0% | 90.4% |
| 4361 | 605.7.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › FHV B2 protein-like › FHV B2 protein-like › B2 | 0.74 | 62.0 | 5.70e-01 | 100.0% | 88.6% |
| 3812957 | 606.1.1.13 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › DUF3475 | 0.73 | 60.0 | 3.88e-01 | 92.2% | 35.3% |
| 3806457 | 3758.1.1.41 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › ROH1-like | 0.73 | 65.0 | 3.95e-01 | 100.0% | 32.7% |
| 4066758 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.73 | 64.0 | 5.15e-01 | 100.0% | 54.0% |
| 3627448 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.73 | 61.0 | 4.90e-01 | 100.0% | 51.8% |
| 3809898 | 6006.1.1.0 ↗ | extended segments › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain | 0.72 | 62.0 | 5.79e-01 | 100.0% | 80.0% |
| 4034228 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.71 | 59.0 | 5.29e-01 | 100.0% | 65.3% |
| 4311479 | 507.1.1.1 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB | 0.70 | 59.0 | 4.23e-01 | 100.0% | 32.1% |
| 3780051 | 3602.1.1.0 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain | 0.69 | 58.0 | 5.51e-01 | 94.1% | 98.3% |
| 5048467 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 59.0 | 4.29e-01 | 100.0% | 35.2% |
| 3663990 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.68 | 54.0 | 4.94e-01 | 90.2% | 68.6% |
| 4121314 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.66 | 56.0 | 4.65e-01 | 100.0% | 57.9% |
| 3864472 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.64 | 51.0 | 3.27e-01 | 100.0% | 45.3% |
| 4030097 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 55.0 | 3.30e-01 | 100.0% | 86.1% |
| 4444459 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.61 | 50.0 | 3.24e-01 | 98.0% | 23.4% |