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KF614509.1AHC30446.1L338C_029__00029

Bact-Vir

KF614509.1__AHC30446.1__L338C_029__00029

Identity

Accession:: KF614509 ↗
Kingdom:: phage

Quality

85.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_vB_RleS_L338C

TaxID: 1414737

Cluster

View cluster (63 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 113-217

PDB

Domain cluster: rep: MG711460.1__AUV61548.1__X__00036__D86-183

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4h87A00	2.60.200.20	Mainly Beta › Sandwich › Tumour Suppressor Smad4 ›	0.58	42.0	4.01e-01	75.2%	89.5%
2jpeA00	2.60.200.20	Mainly Beta › Sandwich › Tumour Suppressor Smad4 ›	0.58	43.0	4.04e-01	79.0%	87.1%
3vpyA00	2.60.200.20	Mainly Beta › Sandwich › Tumour Suppressor Smad4 ›	0.57	41.0	3.74e-01	77.1%	84.8%
4jonC00	2.60.200.20	Mainly Beta › Sandwich › Tumour Suppressor Smad4 ›	0.55	38.0	3.74e-01	72.4%	84.7%
1hw7A01	3.55.30.10	Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain	0.55	43.0	3.73e-01	86.7%	87.9%
6w0pB01	2.70.98.40	Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain	0.54	39.0	2.91e-01	76.2%	79.2%
2vqpA01	2.70.20.30	Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › HRSV-S2 matrix protein, N-terminal domain	0.53	46.0	4.43e-01	99.0%	94.2%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3657616	880.1.1.1 ↗	a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind	0.55	45.0	2.95e-01	92.4%	86.3%

D2 medium residues 13-48_63-107_221-289_313-352

PDB

Domain cluster: rep: LC545444.1__BCD83172.1__NrS3_56__00056__D9-36_55-165

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4w64B00	2.30.110.20	Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like	0.59	47.0	5.06e-01	91.1%	96.2%
2q9kA00	2.30.110.10	Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A	0.59	35.0	3.95e-01	78.9%	75.5%
1kiaA01	3.30.46.10	Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1	0.53	23.0	3.19e-01	76.8%	84.3%
1jw3A00	3.55.10.10	Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain	0.53	27.0	3.13e-01	76.8%	65.7%
3wa5B00	2.60.120.1690	Mainly Beta › Sandwich › Jelly Rolls ›	0.52	27.0	3.30e-01	83.2%	75.8%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4954551	1.1.5.0 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel	0.84	57.0	6.77e-01	78.4%	97.0%
5040331	1.1.5.0 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel	0.77	57.0	6.57e-01	76.8%	99.3%
3502370	1.1.5.47 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2	0.75	58.0	6.27e-01	78.4%	96.9%
4929634	1.1.5.47 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2	0.71	68.0	5.95e-01	100.0%	72.6%
4988100	1.1.13.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins	0.70	45.0	5.60e-01	73.7%	99.2%
2595159	1.1.13.6 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2	0.68	51.0	5.49e-01	78.9%	88.0%
4982153	1.1.5.0 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel	0.65	45.0	3.93e-01	74.7%	49.6%
4349207	1.1.5.0 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel	0.62	37.0	4.11e-01	77.9%	73.2%
164720	1.1.5.0 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel	0.59	35.0	3.95e-01	78.9%	75.5%
3602499	1.1.5.17 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N	0.57	35.0	4.18e-01	74.7%	90.0%
4201044	304.109.1.10 ↗	a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › PF27137	0.54	34.0	4.14e-01	71.1%	97.5%
4118093	1.1.5.17 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N	0.54	35.0	3.87e-01	74.7%	79.4%
5067070	1.1.5.17 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N	0.54	36.0	4.14e-01	74.7%	91.4%
4992907	1.1.5.17 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N	0.52	35.0	3.81e-01	75.3%	82.6%

D3 medium residues 290-312_353-403

PDB