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KF614509.1__AHC30525.1__L338C_108__00108

Bact-Vir

KF614509.1__AHC30525.1__L338C_108__00108

Identity

Accession:
KF614509 ↗
Kingdom:
phage

Quality

71.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_vB_RleS_L338C

TaxID: 1414737

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-67
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2b5uA03 3.10.380.10 Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Colicin E3-like ribonuclease domain 0.56 39.0 3.40e-01 98.3% 43.9%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 34.0 3.56e-01 100.0% 69.8%
1aorA02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.54 41.0 3.02e-01 89.7% 48.4%
4edgA01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.52 39.0 3.23e-01 93.1% 76.1%
1mo7A00 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.51 41.0 2.98e-01 100.0% 67.1%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 42.0 3.72e-01 98.3% 75.0%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
7311 4317.1.1.1 ↗ a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like › DUF1398 0.65 39.0 3.79e-01 100.0% 53.1%
5049308 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 44.0 4.49e-01 98.3% 76.4%
3796165 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 40.0 2.28e-01 89.7% 6.5%
3320813 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.59 49.0 4.70e-01 100.0% 82.2%
4962274 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 41.0 4.39e-01 100.0% 97.8%
3981584 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.58 50.0 3.64e-01 100.0% 78.2%
3711532 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 39.0 2.49e-01 89.7% 13.7%
3473306 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.57 38.0 3.58e-01 70.7% 60.0%
5002505 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 43.0 4.32e-01 96.6% 81.7%
3782191 2003.1.5.26 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_28 0.53 45.0 2.74e-01 98.3% 74.5%
4274409 3018.1.1.1 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.53 43.0 3.87e-01 100.0% 65.9%
3573810 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 35.0 2.81e-01 74.1% 86.6%
3445382 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.51 31.0 3.37e-01 96.6% 85.0%
4469853 2485.1.1.12 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SCO1-SenC 0.50 34.0 2.47e-01 70.7% 65.0%