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KF620435.1__AHB79436.1__psb1_0018__00018

Bact-Vir

KF620435.1__AHB79436.1__psb1_0018__00018

Identity

Accession:
KF620435 ↗
Kingdom:
phage

Quality

85.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Gamaleyavirus› Shigella_phage_pSb-1

TaxID: 1414738

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-53
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2esbA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 36.0 2.72e-01 76.9% 44.4%
1d5rA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.50 39.0 2.81e-01 90.4% 30.5%
D2 high residues 65-153
PDB
Domain cluster: rep: MN871446.1__UKS71963.1__KpLz245_0970__00097__D488-572
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6o38A01 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.70 62.0 6.21e-01 100.0% 98.9%
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.68 58.0 5.81e-01 100.0% 94.4%
4dnyA00 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.66 59.0 5.56e-01 100.0% 86.2%
1id2A00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.63 48.0 4.55e-01 80.9% 79.2%
5tk2B00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.61 44.0 4.49e-01 79.8% 77.3%
1bxvA00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.61 46.0 4.64e-01 80.9% 80.2%
4f7kA01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.60 45.0 4.06e-01 79.8% 78.4%
1ibyA00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.59 44.0 4.12e-01 79.8% 77.7%
6fzvD01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.58 45.0 4.17e-01 85.4% 93.2%
6voxA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.58 44.0 4.12e-01 80.9% 87.5%
1hf2A02 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.58 45.0 4.31e-01 100.0% 72.6%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 42.0 2.93e-01 79.8% 60.8%
1xakA00 2.60.40.1550 Mainly Beta › Sandwich › Immunoglobulin-like › SARS coronavirus X4 0.55 31.0 3.46e-01 91.0% 70.6%
1ujcA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.52 45.0 3.85e-01 100.0% 64.1%
2bpa200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.59e-01 98.9% 73.7%
7chuA01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.50 44.0 2.98e-01 100.0% 32.8%
6fnnB01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.50 45.0 3.84e-01 100.0% 89.6%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2581337 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.70 62.0 6.19e-01 100.0% 97.8%
3942383 520.2.1.0 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE 0.67 58.0 5.81e-01 100.0% 94.4%
185692 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.66 59.0 5.56e-01 100.0% 86.2%
3980189 7525.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.52 45.0 3.85e-01 100.0% 64.5%
4562874 207.11.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.51 44.0 3.29e-01 100.0% 58.0%
3521156 375.4.1.10 ↗ few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like › Amnionless 0.51 34.0 2.93e-01 84.3% 41.3%