←Back to structures

KF620435.1__AHB79474.1__psb1_0056__00056

Bact-Vir

KF620435.1__AHB79474.1__psb1_0056__00056

Identity

Accession:
KF620435 ↗
Kingdom:
phage

Quality

90.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Gamaleyavirus› Shigella_phage_pSb-1

TaxID: 1414738

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-76
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kflA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.56 47.0 3.77e-01 100.0% 69.1%
1jcjA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 44.0 3.05e-01 89.5% 86.9%
2di3B02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.52 45.0 3.66e-01 98.7% 99.4%
3anwB00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 42.0 3.33e-01 89.5% 84.6%
4akgA08 1.10.472.130 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain 0.51 36.0 2.87e-01 72.4% 69.9%
1c4zA01 3.90.1750.10 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Hect, E3 ligase catalytic domains 0.51 44.0 3.53e-01 100.0% 76.2%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2387845 7001.1.1.0 ↗ 0.94 81.0 8.35e-01 90.8% 94.4%
3218916 614.1.1.1 ↗ alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › L27 0.52 33.0 3.59e-01 100.0% 81.7%
3592841 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.51 36.0 3.74e-01 73.7% 91.4%
3478314 197.1.1.3 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP 0.51 42.0 3.72e-01 93.4% 96.5%
5065130 633.12.1.0 ↗ alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.51 36.0 3.54e-01 76.3% 84.7%
D2 high residues 84-145
PDB
Domain cluster: rep: MW630115.1__QWY13218.1__X__00083__D27-75