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KF620435.1__AHB79510.1__psb1_0092__00092

Bact-Vir

KF620435.1__AHB79510.1__psb1_0092__00092

Identity

Accession:
KF620435 ↗
Kingdom:
phage

Quality

65.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 35-105
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.81 42.0 3.40e-01 87.3% 28.6%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 46.0 4.83e-01 100.0% 71.4%
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 48.0 3.94e-01 85.9% 40.0%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 43.0 4.24e-01 85.9% 60.0%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 44.0 3.63e-01 85.9% 36.2%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 54.0 4.64e-01 100.0% 57.3%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 50.0 4.32e-01 100.0% 53.9%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 44.0 3.98e-01 100.0% 53.9%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 52.0 3.99e-01 100.0% 74.3%
1lb6A00 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.60 49.0 3.81e-01 90.1% 63.9%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.59 36.0 3.34e-01 90.1% 43.9%
2bn4B03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 52.0 4.04e-01 100.0% 77.2%
3gzrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 45.0 3.63e-01 85.9% 41.8%
5jozA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 43.0 2.87e-01 91.5% 18.7%
6hpvA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 38.0 3.68e-01 85.9% 57.1%
7jiuA03 3.30.1010.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 0.58 44.0 3.58e-01 83.1% 54.4%
4gioA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 50.0 4.53e-01 95.8% 87.5%
3n54B01 6.20.190.10 Special › Other non-globular › Nuclear Transport Factor 2; Chain: A, › Nutrient germinant receptor protein C, domain 1 0.57 36.0 3.90e-01 73.2% 75.4%
2jr1A01 3.30.160.510 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Histone-like nucleoid-structuring protein H-NS 0.57 35.0 3.64e-01 91.5% 67.2%
2iqiB00 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.57 46.0 3.51e-01 90.1% 40.4%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 43.0 2.97e-01 83.1% 30.0%
4aw8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 40.0 3.01e-01 87.3% 29.0%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 45.0 4.00e-01 100.0% 60.0%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 42.0 2.80e-01 87.3% 20.1%
3gveA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.56 46.0 3.11e-01 98.6% 89.8%
1yliB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 43.0 3.41e-01 84.5% 68.2%
3rbsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 47.0 4.45e-01 95.8% 94.3%
5kkuD00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.55 38.0 2.58e-01 80.3% 18.3%
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.55 47.0 3.90e-01 100.0% 59.6%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.55 46.0 4.11e-01 94.4% 79.6%
1tyeA00 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.55 48.0 2.95e-01 98.6% 95.6%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.55 46.0 3.77e-01 94.4% 82.2%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 48.0 4.01e-01 100.0% 72.1%
2hqsA01 3.40.50.10070 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TolB, N-terminal domain 0.55 40.0 3.28e-01 95.8% 39.4%
5eo6B00 3.40.1500.10 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic 0.55 44.0 3.06e-01 97.2% 71.0%
1swgC00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.54 46.0 3.93e-01 100.0% 94.4%
1vclA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 38.0 2.99e-01 74.6% 41.6%
3el6A00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.53 40.0 2.73e-01 80.3% 37.6%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 39.0 3.49e-01 100.0% 52.3%
5l8sA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 39.0 2.72e-01 80.3% 31.9%
5flwA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 44.0 2.97e-01 97.2% 55.6%
3qszA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 45.0 3.48e-01 100.0% 67.8%
2cwaA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 46.0 4.04e-01 100.0% 77.1%
5ds1A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 43.0 3.96e-01 98.6% 70.7%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.52 44.0 3.37e-01 95.8% 73.0%
2wbfX00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 46.0 3.10e-01 100.0% 84.5%
5c7qB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 42.0 3.18e-01 90.1% 64.4%
2z6cA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 39.0 3.35e-01 90.1% 48.8%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.51 42.0 3.25e-01 95.8% 84.8%
6c98A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 4.04e-01 97.2% 96.7%
3vhxF00 2.60.40.4330 Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain 0.51 35.0 3.12e-01 71.8% 91.2%
3n89A01 3.30.310.270 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.51 40.0 2.99e-01 90.1% 98.0%
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 46.0 4.13e-01 100.0% 83.3%
3bm4A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.50 41.0 3.00e-01 90.1% 64.5%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3217507 243.1.1.98 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382_C 0.81 52.0 4.34e-01 74.6% 40.4%
4950462 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.79 44.0 4.80e-01 74.6% 66.7%
5032255 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 46.0 4.68e-01 91.5% 65.7%
3798282 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.71 48.0 3.99e-01 85.9% 40.0%
3337303 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 49.0 4.81e-01 95.8% 68.0%
3265608 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.70 51.0 4.27e-01 85.9% 45.8%
1954221 2.26.1.1 beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 0.66 48.0 4.72e-01 100.0% 72.0%
3272782 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.64 40.0 4.53e-01 74.6% 89.8%
3390126 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 45.0 4.06e-01 73.2% 76.8%
3980770 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.64 42.0 3.20e-01 85.9% 28.5%
4042289 2008.6.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.64 49.0 3.37e-01 84.5% 66.5%
3496371 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 47.0 3.77e-01 100.0% 40.0%
3267804 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 48.0 4.22e-01 94.4% 58.0%
3416893 2008.6.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.62 51.0 3.55e-01 90.1% 69.1%
4930369 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.62 38.0 3.22e-01 71.8% 35.0%
5037168 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.61 48.0 4.02e-01 100.0% 48.8%
5039455 223.1.1.27 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.61 41.0 3.42e-01 93.0% 39.8%
3629811 11.1.1.532 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 0.61 52.0 4.66e-01 94.4% 77.0%
5042375 2.26.1.1 beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 0.60 47.0 4.63e-01 100.0% 78.7%
5061316 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.60 40.0 3.30e-01 71.8% 37.7%
3548841 2008.6.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.60 48.0 3.26e-01 90.1% 75.4%
3192331 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.60 53.0 3.21e-01 100.0% 31.5%
3215667 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.60 48.0 4.06e-01 100.0% 52.5%
3927132 221.13.1.0 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.59 53.0 4.52e-01 100.0% 97.4%
1555740 5.1.12.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.59 44.0 3.03e-01 80.3% 46.6%
3443030 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 48.0 4.63e-01 94.4% 78.8%
3696652 7580.1.1.1 a/b three-layered sandwiches › RibA-like › RibA-like › RibA-like › GTP_cyclohydro2 0.58 49.0 3.47e-01 94.4% 67.3%
4809346 1.1.13.57 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 0.55 40.0 3.76e-01 76.1% 100.0%
4981234 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.55 42.0 4.40e-01 100.0% 89.2%
3444245 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.55 38.0 3.82e-01 85.9% 70.7%
4000809 2.1.1.89 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis3l2_C_term 0.55 41.0 3.80e-01 98.6% 61.1%
3773618 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.55 49.0 3.92e-01 100.0% 95.0%
4277768 223.2.1.52 a+b three layers › Profilin-like › profilin-like › profilin-like › GAP1-N2 0.54 44.0 3.50e-01 88.7% 60.0%
4029264 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 48.0 3.88e-01 100.0% 95.7%
3257734 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 47.0 4.24e-01 100.0% 96.0%
4344687 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.54 39.0 3.52e-01 100.0% 53.3%
3829345 247.1.1.35 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2, Lactamase_B_4, Anti-Pycsar_Apyc1 0.54 44.0 2.55e-01 94.4% 50.1%
4524448 3156.1.1.18 beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › CLPTM1 0.53 46.0 3.43e-01 95.8% 77.1%
3408147 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.53 47.0 3.22e-01 100.0% 71.2%
3920842 223.1.1.29 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 0.53 39.0 3.01e-01 85.9% 32.4%
3301111 331.3.1.25 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PaO 0.53 41.0 3.36e-01 84.5% 56.3%
4028900 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 38.0 2.87e-01 76.1% 32.6%
4022522 223.2.1.48 a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N, Longin_2 0.53 42.0 3.20e-01 87.3% 65.7%
2035523 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.53 45.0 3.92e-01 97.2% 87.5%
4020096 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 41.0 3.36e-01 100.0% 44.3%
3486144 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.52 40.0 2.69e-01 84.5% 26.7%
3839607 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.52 46.0 3.92e-01 100.0% 83.9%
3995685 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.52 46.0 4.03e-01 100.0% 90.8%
4984595 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 37.0 2.62e-01 87.3% 22.0%
3786587 1.1.1.27 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_N 0.52 41.0 2.66e-01 91.5% 40.5%
4151835 212.1.1.1 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.52 38.0 3.12e-01 80.3% 58.6%
3263969 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 44.0 3.94e-01 100.0% 84.8%
4416484 7503.1.1.3 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.52 37.0 3.09e-01 74.6% 88.3%
4466001 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 40.0 3.29e-01 85.9% 49.6%
4949079 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.51 34.0 3.37e-01 84.5% 62.5%
119302 3146.1.1.0 a+b complex topology › gH main domain › gH main domain › gH main domain 0.51 42.0 2.81e-01 97.2% 88.6%
5082808 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.51 39.0 2.20e-01 85.9% 6.9%
3536617 223.1.1.29 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 0.51 39.0 3.29e-01 85.9% 51.5%
4950607 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.51 37.0 2.82e-01 87.3% 30.0%
4232994 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.51 44.0 3.88e-01 100.0% 89.1%
3377325 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.50 36.0 2.95e-01 87.3% 37.9%
4266100 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.50 36.0 2.31e-01 87.3% 14.7%
4427435 7503.1.1.22 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › PF29199 0.50 41.0 3.32e-01 91.5% 44.8%
4873829 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.50 38.0 3.51e-01 87.3% 63.4%