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KF626665.1__AHB12023.1__Sano_03__00003

Bact-Vir

KF626665.1__AHB12023.1__Sano_03__00003

Identity

Accession:
KF626665 ↗
Kingdom:
phage

Quality

94.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-59
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.68 54.0 5.06e-01 89.3% 85.9%
1txoB00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.66 52.0 3.46e-01 87.5% 32.2%
4p4tA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 55.0 3.44e-01 100.0% 17.6%
1svdM00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.63 54.0 4.44e-01 100.0% 74.1%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.63 50.0 3.87e-01 92.9% 60.9%
4q0jA03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.63 48.0 3.70e-01 87.5% 42.3%
4gxbA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 53.0 4.52e-01 100.0% 85.6%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.61 48.0 3.73e-01 89.3% 85.7%
3pvlA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 51.0 4.39e-01 100.0% 91.7%
2a90A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.61 47.0 3.91e-01 83.9% 80.6%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.61 44.0 4.54e-01 82.1% 92.0%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 51.0 4.41e-01 100.0% 90.4%
2xf1A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.60 49.0 3.92e-01 92.9% 46.7%
1r9fA01 3.30.390.180 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 0.60 47.0 3.81e-01 87.5% 79.8%
7a6pB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 47.0 3.44e-01 83.9% 73.9%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.59 45.0 3.44e-01 87.5% 38.6%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.59 42.0 3.25e-01 92.9% 30.4%
2w91A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 51.0 4.13e-01 96.4% 75.7%
4dxaB01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 50.0 4.24e-01 100.0% 90.7%
3d3oA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 43.0 3.23e-01 87.5% 34.7%
2knrA00 3.40.1530.20 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › Protein of unknown function (DUF1491) 0.58 48.0 3.93e-01 100.0% 66.1%
3ddcB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 48.0 3.78e-01 100.0% 72.2%
4ekuA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 49.0 3.94e-01 100.0% 77.8%
1z1dB00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.57 47.0 3.75e-01 100.0% 69.5%
2qyxA02 3.30.70.1360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like 0.57 47.0 3.85e-01 98.2% 56.6%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 47.0 4.03e-01 100.0% 78.9%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 46.0 4.22e-01 100.0% 94.9%
2uwqA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 46.0 4.10e-01 100.0% 88.4%
3lqmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 48.0 4.15e-01 100.0% 73.3%
1wfjA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.55 41.0 3.25e-01 82.1% 41.1%
1dyqA02 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 41.0 3.15e-01 83.9% 74.6%
8bvoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 48.0 4.20e-01 100.0% 87.2%
6jebA01 3.30.379.10 Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like 0.53 43.0 3.99e-01 91.1% 76.0%
3v10A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 44.0 3.41e-01 100.0% 67.8%
4bwsF00 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.53 37.0 3.61e-01 83.9% 67.2%
2j8bA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.52 40.0 3.71e-01 87.5% 84.6%
4dmiA02 2.60.120.1010 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.39e-01 100.0% 62.0%
5xbfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 40.0 3.69e-01 98.2% 95.4%
2pn5A08 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.55e-01 98.2% 85.6%
5ujeA01 3.30.1760.10 Alpha Beta › 2-Layer Sandwich › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 0.51 41.0 3.44e-01 98.2% 83.8%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3281041 301.13.1.1 a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.71 60.0 4.60e-01 94.6% 90.8%
169110 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.68 54.0 5.08e-01 89.3% 87.1%
None 0.68 59.0 3.36e-01 100.0% 10.0%
3848273 2004.1.1.36 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.67 59.0 4.02e-01 100.0% 29.8%
3620456 221.1.1.64 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Formin_GBD_N 0.66 58.0 4.68e-01 100.0% 91.8%
4128176 6108.1.1.0 alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins 0.66 57.0 3.23e-01 100.0% 9.5%
3303966 6108.1.1.11 alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Dynamin_N 0.66 55.0 3.17e-01 100.0% 10.2%
3886404 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.65 56.0 4.42e-01 100.0% 70.4%
1401775 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 55.0 3.44e-01 100.0% 17.6%
2629457 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.64 52.0 3.98e-01 92.9% 40.6%
5014007 3115.2.1.0 a+b two layers › GP2-like › GP2 › GP2 0.63 47.0 4.78e-01 83.9% 87.3%
3211869 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 55.0 4.74e-01 100.0% 91.1%
3518750 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.63 54.0 4.45e-01 100.0% 78.1%
3941323 3662.1.1.0 a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related 0.62 44.0 3.53e-01 73.2% 60.0%
3621505 3662.1.1.0 a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related 0.62 46.0 3.83e-01 82.1% 58.1%
4982257 3662.1.1.4 a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC_bac 0.60 43.0 3.52e-01 75.0% 63.8%
2496895 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 52.0 4.42e-01 100.0% 69.1%
4340143 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.59 46.0 4.34e-01 87.5% 89.9%
5001166 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.59 43.0 3.36e-01 85.7% 34.1%
3993535 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 50.0 4.50e-01 100.0% 93.8%
3728804 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 49.0 4.18e-01 100.0% 98.0%
3624465 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 50.0 4.21e-01 100.0% 94.0%
1401773 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 48.0 3.12e-01 100.0% 20.1%
3560843 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 49.0 4.03e-01 100.0% 86.4%
5035183 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 39.0 3.47e-01 82.1% 48.8%
3621904 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 49.0 3.97e-01 100.0% 83.5%
4863191 3662.1.1.3 a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC4 0.57 43.0 3.50e-01 83.9% 55.8%
5048876 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.57 40.0 3.86e-01 83.9% 64.6%
3513575 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 48.0 3.92e-01 100.0% 83.5%
4950084 2011.2.1.4 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI 0.57 44.0 3.27e-01 85.7% 93.5%
3461367 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 48.0 4.14e-01 100.0% 93.7%
3985028 213.1.1.103 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Mom 0.56 43.0 2.94e-01 83.9% 47.4%
3207580 7508.1.1.0 a/b three-layered sandwiches › O-glucosyltransferase rumi N-terminal domain › O-glucosyltransferase rumi N-terminal domain › O-glucosyltransferase rumi N-terminal domain 0.56 40.0 3.06e-01 75.0% 38.5%
4599214 221.1.1.73 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RASSF8-10_RA 0.56 46.0 3.92e-01 100.0% 91.4%
3531085 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.56 46.0 4.02e-01 100.0% 91.6%
3702726 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 47.0 4.14e-01 100.0% 85.6%
3528622 11.1.1.597 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ELFN_Fn3 0.55 48.0 4.24e-01 100.0% 80.0%
4383342 221.1.1.113 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_3 0.55 46.0 3.92e-01 100.0% 94.0%
3781202 3662.1.1.2 a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › POC3_POC4 0.55 41.0 3.33e-01 80.4% 50.9%
5043481 2011.2.1.0 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like 0.55 42.0 3.09e-01 83.9% 96.9%
3351227 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 45.0 2.85e-01 100.0% 16.9%
3718648 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 42.0 3.45e-01 85.7% 44.4%
3910189 11.1.1.597 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ELFN_Fn3 0.55 48.0 3.67e-01 100.0% 51.5%
3911204 382.1.1.16 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 0.55 40.0 3.79e-01 85.7% 89.3%
4943472 3662.1.1.0 a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related 0.54 39.0 3.32e-01 80.4% 51.4%
3407846 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.54 44.0 3.80e-01 98.2% 88.0%
3701633 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 46.0 4.07e-01 100.0% 95.3%
3497076 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 45.0 3.96e-01 100.0% 90.0%
3934020 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.53 41.0 3.54e-01 87.5% 93.7%
3704468 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 47.0 3.76e-01 100.0% 91.8%
3746678 382.1.1.16 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 0.52 40.0 3.71e-01 87.5% 88.0%
3458394 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.52 43.0 3.74e-01 100.0% 77.9%
2856948 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 39.0 3.30e-01 83.9% 53.0%
5014311 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 44.0 2.93e-01 100.0% 30.6%
3412134 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.52 39.0 3.11e-01 83.9% 84.6%
None 0.52 41.0 2.44e-01 96.4% 23.9%
3931970 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 40.0 3.44e-01 98.2% 86.4%
3487190 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 43.0 3.70e-01 100.0% 73.7%
3237024 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 45.0 3.53e-01 100.0% 69.2%
None 0.51 40.0 2.80e-01 89.3% 65.7%
3877800 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 43.0 3.53e-01 100.0% 73.6%
3876105 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.50 42.0 3.66e-01 100.0% 90.5%
3630093 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.50 38.0 3.58e-01 89.3% 97.3%