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KF626666.1__AHB12103.1__Paz_06__00006

Bact-Vir

KF626666.1__AHB12103.1__Paz_06__00006

Identity

Accession:
KF626666 ↗
Kingdom:
phage

Quality

70.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autonotataviridae› Pazvirus› Xylella_phage_Paz

TaxID: 1415145

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 49-111
PDB
Domain cluster: rep: MZ326854.1__QYW01726.1__CPT_Ptah_011__00011__D11-76
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.67 50.0 4.95e-01 100.0% 75.8%
2ww8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 45.0 3.74e-01 96.8% 43.4%
4bkwA02 3.30.1360.220 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Domain of unknown function (DUF3480), N-terminal subdomain 0.61 47.0 4.04e-01 82.5% 65.0%
2pn0A02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.61 50.0 4.69e-01 95.2% 86.6%
3hrzC01 2.20.210.20 Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › 0.60 42.0 4.67e-01 96.8% 95.9%
2b39A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.60 42.0 3.50e-01 96.8% 40.5%
3d33A00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 44.0 3.88e-01 98.4% 53.2%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 48.0 3.19e-01 98.4% 90.7%
2f9zC00 3.30.1330.200 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 0.57 50.0 3.79e-01 98.4% 70.1%
3besR02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 42.0 3.53e-01 100.0% 45.0%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 46.0 3.11e-01 98.4% 91.6%
5kycB02 2.20.210.10 Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › ubp-family deubiquitinating enzyme superfamily 0.57 44.0 4.74e-01 96.8% 98.1%
3ujzA03 2.60.20.40 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › 0.56 37.0 3.19e-01 93.7% 43.0%
4e9kA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.55 43.0 2.88e-01 98.4% 22.1%
4czwA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 46.0 2.93e-01 100.0% 83.2%
1c77B00 3.10.20.130 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 39.0 3.24e-01 100.0% 39.1%
2o6cA00 2.60.40.2480 Mainly Beta › Sandwich › Immunoglobulin-like › Periplasmic metal-binding protein Tp34-type 0.54 44.0 3.27e-01 100.0% 34.8%
5jpnB04 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.54 40.0 3.26e-01 96.8% 41.3%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.54 39.0 4.34e-01 93.7% 98.0%
6pf8A01 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.54 46.0 3.39e-01 98.4% 53.4%
8bs9A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 44.0 2.90e-01 96.8% 92.7%
2b5iB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.77e-01 96.8% 59.6%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.52 46.0 4.24e-01 100.0% 95.2%
1f94A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.52 44.0 4.46e-01 100.0% 95.2%
4harA00 3.10.50.50 Alpha Beta › Roll › Chitinase A; domain 3 › Rubella virus capsid protein 0.52 42.0 3.72e-01 93.7% 95.9%
2pstX00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.51 31.0 3.22e-01 98.4% 62.3%
1xe0C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.51 37.0 3.25e-01 100.0% 49.5%
2jqzA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 44.0 3.53e-01 98.4% 100.0%
1gtdA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.51 45.0 4.18e-01 100.0% 100.0%
3i3tA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 47.0 2.94e-01 100.0% 24.4%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 37.0 3.23e-01 100.0% 50.0%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.50 44.0 4.35e-01 100.0% 95.4%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3413371 10.32.1.68 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Glce_b_sandwich 0.73 66.0 4.80e-01 100.0% 53.9%
3518607 10.32.1.68 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Glce_b_sandwich 0.72 64.0 4.72e-01 100.0% 75.8%
3221194 10.32.1.68 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Glce_b_sandwich 0.71 63.0 4.43e-01 100.0% 57.9%
3969578 3268.1.1.0 ↗ a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase 0.70 45.0 4.79e-01 96.8% 74.5%
3593225 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.67 59.0 4.17e-01 100.0% 79.0%
3615740 10.32.1.22 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CFA20_dom 0.66 59.0 4.15e-01 100.0% 58.8%
3390767 10.32.1.22 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CFA20_dom 0.66 58.0 4.15e-01 98.4% 56.8%
3556309 10.32.1.68 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Glce_b_sandwich 0.66 59.0 4.28e-01 100.0% 66.5%
3471932 10.32.1.22 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CFA20_dom 0.66 59.0 4.10e-01 100.0% 57.0%
3618181 10.32.1.68 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Glce_b_sandwich 0.66 58.0 4.40e-01 100.0% 51.3%
3849508 10.32.1.22 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CFA20_dom 0.66 57.0 3.97e-01 98.4% 51.2%
2815886 10.32.1.22 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CFA20_dom 0.65 58.0 4.13e-01 100.0% 56.1%
4223138 10.32.1.22 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CFA20_dom 0.65 57.0 4.00e-01 98.4% 54.1%
5005235 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.65 44.0 3.95e-01 96.8% 51.8%
3487736 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.65 57.0 4.16e-01 100.0% 58.3%
3222792 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 48.0 4.08e-01 100.0% 49.0%
3601143 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.65 56.0 4.15e-01 100.0% 64.0%
3702898 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.64 56.0 3.99e-01 98.4% 61.1%
3524146 10.32.1.22 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CFA20_dom 0.64 56.0 3.79e-01 100.0% 50.2%
5041001 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.64 42.0 3.85e-01 95.2% 52.5%
3666388 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.64 56.0 3.84e-01 100.0% 50.9%
5052959 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 48.0 5.14e-01 100.0% 92.7%
3622826 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.64 47.0 4.01e-01 100.0% 49.0%
3999276 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.63 50.0 3.50e-01 100.0% 28.6%
3264429 11.1.1.801 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7035 0.63 56.0 4.36e-01 100.0% 55.7%
3622948 11.2.1.52 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_nem 0.62 52.0 3.82e-01 100.0% 37.3%
3783904 331.1.1.12 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF155 0.62 46.0 3.11e-01 79.4% 77.3%
3480345 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 53.0 3.97e-01 98.4% 66.7%
3818454 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 54.0 3.70e-01 100.0% 30.7%
3959898 1152.1.1.2 ↗ a+b three layers › a+b domain in conserved hypothetical protein Rv3899c › a+b domain in conserved hypothetical protein Rv3899c › a+b domain in conserved hypothetical protein Rv3899c › PF27215 0.61 52.0 4.21e-01 100.0% 88.5%
4983067 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.61 45.0 4.95e-01 98.4% 100.0%
4152523 11.1.1.129 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Interfer-bind 0.61 44.0 3.80e-01 100.0% 49.0%
3496817 3369.1.1.1 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.60 52.0 3.93e-01 98.4% 86.9%
3988650 3370.1.1.1 ↗ beta sandwiches › Lactococcin 972 › Lactococcin 972 › Lactococcin 972 › Lactococcin_972 0.60 42.0 3.98e-01 96.8% 61.3%
4956150 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 47.0 4.97e-01 100.0% 96.4%
3734263 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 40.0 2.95e-01 71.4% 95.0%
3483429 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 51.0 4.00e-01 100.0% 62.1%
3480076 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.57 50.0 3.88e-01 100.0% 59.7%
3256398 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 46.0 3.97e-01 98.4% 57.9%
3272932 219.1.1.50 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH_1 0.56 47.0 2.89e-01 100.0% 64.7%
4969234 221.6.1.1 ↗ a+b two layers › beta-Grasp › MM3350-like › MM3350-like › PRiA4_ORF3 0.56 43.0 3.19e-01 100.0% 29.5%
3974107 2007.1.19.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin 0.56 48.0 3.04e-01 100.0% 52.1%
4979092 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 45.0 2.93e-01 100.0% 33.7%
4931333 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 42.0 3.28e-01 100.0% 36.4%
4061222 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.55 45.0 2.62e-01 100.0% 39.9%
3395520 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.54 47.0 4.81e-01 96.8% 98.3%
3238303 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 3.79e-01 96.8% 65.5%
3962499 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.88e-01 96.8% 70.7%
5061487 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.52 40.0 3.17e-01 100.0% 39.1%
3955258 3709.1.1.1 ↗ a+b two layers › ESX-1 secretion system protein eccB1 linker domains › ESX-1 secretion system protein eccB1 linker domains › ESX-1 secretion system protein eccB1 linker domains › T7SS_ESX1_EccB 0.52 41.0 3.56e-01 96.8% 55.0%
4000914 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.52 43.0 2.89e-01 98.4% 90.0%
None — 0.51 42.0 2.85e-01 98.4% 100.0%
4083039 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 46.0 3.74e-01 98.4% 56.5%
3911651 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.51 42.0 2.72e-01 98.4% 89.7%