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KF626666.1__AHB12107.1__Paz_10__00010

Bact-Vir

KF626666.1__AHB12107.1__Paz_10__00010

Identity

Accession:
KF626666 ↗
Kingdom:
phage

Quality

75.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autonotataviridae› Pazvirus› Xylella_phage_Paz

TaxID: 1415145

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 69-149
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 54.0 5.65e-01 70.4% 76.3%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 54.0 4.54e-01 76.5% 45.9%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 57.0 5.35e-01 90.1% 70.0%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 48.0 5.31e-01 81.5% 96.9%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.63 56.0 4.59e-01 100.0% 90.1%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.62 43.0 3.62e-01 72.8% 77.9%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 43.0 3.83e-01 74.1% 51.3%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 44.0 4.54e-01 76.5% 81.3%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 46.0 4.24e-01 82.7% 68.5%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.60 46.0 4.09e-01 84.0% 90.1%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 38.0 4.13e-01 74.1% 81.5%
3rd7A00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.59 51.0 3.56e-01 98.8% 82.2%
5bncA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.58 42.0 4.06e-01 76.5% 81.7%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.56 40.0 3.88e-01 74.1% 86.7%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 32.0 3.46e-01 93.8% 64.8%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.55 46.0 3.51e-01 90.1% 75.8%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 3.95e-01 72.8% 80.0%
2awnC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 36.0 4.21e-01 76.5% 96.6%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 36.0 3.38e-01 70.4% 80.6%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 36.0 3.86e-01 70.4% 84.3%
3j7yD01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 36.0 3.26e-01 71.6% 52.8%
3wewA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 42.0 3.01e-01 86.4% 60.9%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 40.0 3.22e-01 84.0% 58.1%
2bzlA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 43.0 2.99e-01 93.8% 63.4%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 33.0 3.64e-01 79.0% 87.1%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3656401 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 53.0 5.58e-01 70.4% 70.7%
147797 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.80 54.0 5.93e-01 70.4% 85.3%
3768116 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.77 53.0 3.82e-01 72.8% 27.0%
3553413 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.76 54.0 5.31e-01 72.8% 70.6%
4427477 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 52.0 4.95e-01 72.8% 61.1%
3784770 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.76 51.0 5.37e-01 70.4% 92.0%
3246086 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 50.0 4.74e-01 72.8% 60.0%
3184235 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.70 51.0 4.13e-01 75.3% 66.2%
3932647 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 47.0 4.68e-01 70.4% 68.2%
3730011 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.67 47.0 3.92e-01 74.1% 64.3%
3550248 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.63 49.0 4.61e-01 86.4% 68.0%
4220608 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.62 43.0 4.47e-01 81.5% 77.3%
3960733 330.8.1.1 ↗ a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like 0.62 41.0 4.06e-01 96.3% 64.7%
3864474 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.62 47.0 3.74e-01 81.5% 75.8%
4486857 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.60 42.0 3.55e-01 72.8% 91.1%
3582655 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.60 50.0 4.86e-01 100.0% 82.2%
3188394 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.57 43.0 3.84e-01 82.7% 78.3%
3584249 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.56 38.0 3.46e-01 70.4% 62.7%
3893735 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.56 42.0 3.76e-01 79.0% 93.9%
3598064 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.56 42.0 3.70e-01 82.7% 99.2%
3825119 3270.1.1.0 ↗ a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase 0.54 39.0 3.80e-01 75.3% 83.3%
4095892 2.4.1.3 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.54 40.0 3.32e-01 77.8% 87.1%
4343392 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 36.0 3.30e-01 70.4% 82.7%
3974126 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.53 42.0 3.14e-01 86.4% 48.5%
3427749 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.53 34.0 3.70e-01 79.0% 83.1%
4125417 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.50 42.0 2.97e-01 95.1% 73.8%
3951937 330.8.1.1 ↗ a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like 0.50 37.0 3.63e-01 96.3% 70.8%