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KF626666.1__AHB12144.1__Paz_47__00047

Bact-Vir

KF626666.1__AHB12144.1__Paz_47__00047

Identity

Accession:
KF626666 ↗
Kingdom:
phage

Quality

84.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autonotataviridae› Pazvirus› Xylella_phage_Paz

TaxID: 1415145

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 181-289
PDB
Domain cluster: rep: OR521085.1__WNO28334.1__SEA_PSONYX_24__00024__D30-132
D2 medium residues 74-142
PDB
Domain cluster: rep: OM818331.1__UOK18351.1__SEA_BRUHMOMENT_35__00035__D131-183
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.82 57.0 6.29e-01 79.7% 90.9%
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.70 45.0 5.02e-01 72.5% 88.2%
1s04A00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.69 47.0 3.98e-01 71.0% 100.0%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 47.0 3.97e-01 76.8% 46.5%
3ijmA00 3.90.1570.20 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.64 48.0 3.80e-01 81.2% 49.3%
4maaA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 50.0 3.76e-01 84.1% 35.9%
2ostD00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.63 45.0 3.71e-01 76.8% 57.1%
4bndA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.63 46.0 3.52e-01 78.3% 35.9%
3rmhB00 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 44.0 3.62e-01 78.3% 91.0%
3h09A03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 43.0 4.02e-01 75.4% 75.0%
1ym5A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.59 42.0 3.44e-01 76.8% 68.4%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 40.0 3.73e-01 75.4% 60.0%
5ha4A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.57 42.0 3.42e-01 79.7% 89.0%
3ot2A00 3.90.1570.10 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › tt1808, chain A 0.55 46.0 3.49e-01 95.7% 40.2%
4aezA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 39.0 2.53e-01 76.8% 33.4%
4paaA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.53 38.0 2.90e-01 76.8% 66.5%
1ezrA00 3.90.245.10 Alpha Beta › Alpha-Beta Complex › Inosine-uridine Nucleoside N-ribohydrolase; Chain A › Ribonucleoside hydrolase-like 0.52 38.0 2.53e-01 79.7% 32.7%
4gc1A01 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.52 39.0 3.44e-01 82.6% 87.5%
3ejxA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 37.0 2.97e-01 78.3% 72.1%
5c2vB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 42.0 2.79e-01 100.0% 52.8%
3ktsA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.50 41.0 3.09e-01 92.8% 51.9%
3tc9A02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.50 40.0 2.62e-01 88.4% 49.5%
3nd1A02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.50 37.0 3.25e-01 81.2% 51.8%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3528795 3761.1.1.0 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.90 57.0 7.05e-01 75.4% 100.0%
3623217 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.86 57.0 6.57e-01 73.9% 94.0%
3917719 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.84 54.0 6.51e-01 71.0% 100.0%
1505155 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.82 57.0 6.27e-01 79.7% 89.3%
3474295 2004.5.1.3 ↗ a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN 0.73 52.0 3.52e-01 75.4% 40.8%
5002640 3761.1.1.1 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 0.72 48.0 5.51e-01 71.0% 96.0%
1107990 3761.1.1.1 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 0.70 45.0 5.05e-01 72.5% 90.0%
3818549 59.1.1.2 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › RNA_pol_Rpc4 0.68 33.0 2.87e-01 82.6% 29.5%
4082277 2.1.1.325 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › IgaA 0.68 47.0 4.02e-01 72.5% 100.0%
3535755 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.67 47.0 3.74e-01 73.9% 46.4%
3516794 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.66 48.0 3.80e-01 76.8% 42.1%
4177188 3312.1.1.0 ↗ a+b two layers › Domain 2 in immunoglobulin A protease › Domain 2 in immunoglobulin A protease › Domain 2 in immunoglobulin A protease 0.66 48.0 4.66e-01 75.4% 73.3%
3502260 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.65 47.0 3.89e-01 76.8% 44.8%
3899210 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.65 45.0 3.78e-01 72.5% 57.4%
3905730 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.65 47.0 3.97e-01 76.8% 46.1%
3513933 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.64 46.0 3.78e-01 76.8% 43.8%
5028250 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.64 45.0 3.89e-01 73.9% 63.8%
3517867 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.63 45.0 3.74e-01 76.8% 43.8%
3508119 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.63 45.0 3.81e-01 76.8% 47.5%
3518947 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.62 45.0 3.74e-01 76.8% 43.3%
4999472 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.61 45.0 3.30e-01 79.7% 83.2%
3961965 3097.1.1.1 ↗ a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C 0.60 42.0 4.33e-01 73.9% 80.0%
3279969 2008.1.1.20 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 0.59 49.0 3.64e-01 92.8% 47.6%
3954395 3097.1.1.0 ↗ a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y 0.59 42.0 4.49e-01 75.4% 96.4%
3282814 3097.1.1.0 ↗ a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y 0.59 40.0 3.91e-01 72.5% 65.0%
4033230 2008.1.1.155 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › CoiA_nuc 0.59 41.0 3.28e-01 73.9% 44.8%
4928895 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.57 47.0 3.18e-01 91.3% 31.7%
3226023 3156.1.1.9 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_3 0.56 38.0 2.71e-01 76.8% 24.5%
4479841 2.1.1.268 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30833 0.55 38.0 2.71e-01 72.5% 80.0%
2707206 5.1.3.116 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 0.54 40.0 2.60e-01 78.3% 98.1%
3875076 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.54 43.0 3.47e-01 89.9% 49.0%
3289024 3097.1.1.1 ↗ a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C 0.54 39.0 3.62e-01 79.7% 60.0%
3509348 214.1.1.15 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063, DUF7145 0.54 46.0 3.10e-01 100.0% 78.0%
3968304 5.1.3.18 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SdiA-regulated 0.54 40.0 2.79e-01 81.2% 50.8%
3967702 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.54 37.0 3.12e-01 72.5% 52.8%
3593438 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 29.0 2.79e-01 81.2% 41.2%
4381079 221.1.2.7 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › RS4NT 0.53 38.0 3.23e-01 73.9% 71.8%
3961969 3097.1.1.1 ↗ a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C 0.53 40.0 4.20e-01 84.1% 98.3%
5000503 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.52 38.0 3.42e-01 78.3% 78.0%
4646593 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.52 37.0 3.08e-01 75.4% 96.3%
3693882 286.1.1.3 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PrpF 0.52 37.0 2.85e-01 79.7% 70.5%
None — 0.51 38.0 2.66e-01 82.6% 31.2%
3196992 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.50 38.0 2.77e-01 84.1% 82.3%