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KF626668.1__AHB12202.1__Salvo_02__00002

Bact-Vir

KF626668.1__AHB12202.1__Salvo_02__00002

Identity

Accession:
KF626668 ↗
Kingdom:
phage

Quality

90.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casjensviridae› Salvovirus› Xylella_phage_Salvo

TaxID: 1415147

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-69
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7kggC01 3.30.2090.10 Alpha Beta › 2-Layer Sandwich › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 0.54 38.0 3.53e-01 75.8% 93.3%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3879013 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 49.0 4.46e-01 80.3% 70.0%
4529421 865.1.1.2 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › TilS_C 0.58 40.0 3.47e-01 72.7% 51.4%
3291064 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.55 39.0 2.53e-01 77.3% 89.2%
D2 high residues 75-153
PDB
Domain cluster: rep: SRR1747030_scaffold_3_prodigal-single.1__X__X__00033__D114-206
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3winE03 2.60.120.1090 Mainly Beta › Sandwich › Jelly Rolls › 0.56 33.0 3.06e-01 100.0% 41.8%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 4.19e-01 100.0% 82.9%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 46.0 3.92e-01 100.0% 74.3%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 46.0 3.96e-01 100.0% 59.7%
1y9lA00 2.40.128.230 Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM 0.53 47.0 4.24e-01 100.0% 95.5%
1e2rA02 2.140.10.20 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 0.53 42.0 2.68e-01 87.3% 20.6%
2ej8B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.90e-01 100.0% 74.8%
2l1sA00 3.10.450.160 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › inner membrane protein cigr 0.53 44.0 4.41e-01 100.0% 86.7%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 4.14e-01 100.0% 72.2%
4f7oA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 44.0 3.27e-01 100.0% 40.9%
4trtA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 35.0 3.11e-01 70.9% 71.3%
3holA01 2.40.128.250 Mainly Beta › Beta Barrel › Lipocalin › 0.51 45.0 4.44e-01 100.0% 94.0%
2qyxA02 3.30.70.1360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like 0.51 43.0 3.82e-01 93.7% 85.8%
2qlcA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 40.0 3.51e-01 88.6% 78.6%
4czxA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.96e-01 100.0% 96.3%
1itxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.50 41.0 4.26e-01 98.7% 100.0%
2jpiA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.50 32.0 3.10e-01 87.3% 53.1%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3623511 220.1.1.159 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_met_RdRP 0.55 47.0 3.75e-01 100.0% 82.3%
3351646 221.1.1.166 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF26130 0.55 46.0 4.36e-01 94.9% 100.0%
5053646 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.54 36.0 3.59e-01 88.6% 64.7%
3593683 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.53 43.0 2.99e-01 91.1% 42.7%
3948032 3155.1.1.1 ↗ a+b two layers › Uncharacterized protein yohN › Uncharacterized protein yohN › Uncharacterized protein yohN › RcnB 0.52 43.0 4.39e-01 100.0% 91.0%
5058484 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.52 32.0 3.35e-01 82.3% 67.1%
4024501 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 45.0 4.13e-01 100.0% 75.2%
3260335 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.52 40.0 2.60e-01 84.8% 92.2%
4031431 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.52 31.0 3.32e-01 88.6% 70.8%
3648162 2003.1.5.31 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.51 43.0 2.83e-01 100.0% 67.6%
3495394 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.12e-01 86.1% 54.9%
3348659 2003.1.5.31 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.50 45.0 2.92e-01 100.0% 69.7%
3294222 2003.1.5.31 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.50 44.0 2.82e-01 100.0% 65.5%
3646130 2003.1.5.31 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.50 44.0 3.14e-01 100.0% 45.5%