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KF669650.1__AGY47125.1__CN1A_16__00016

Bact-Vir

KF669650.1__AGY47125.1__CN1A_16__00016

Identity

Accession:
KF669650 ↗
Kingdom:
phage

Quality

75.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-125
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04404.18 best ERF 30.6 4.40e-07 99.2% 72.5%
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.75 70.0 6.46e-01 100.0% 86.5%
2jq5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 42.0 4.10e-01 76.5% 57.8%
1ewfA02 3.15.20.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 0.65 47.0 3.53e-01 73.9% 43.8%
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 47.0 4.62e-01 80.7% 72.4%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 45.0 4.42e-01 89.9% 67.2%
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.62 54.0 5.20e-01 94.1% 93.4%
2bmoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 48.0 4.13e-01 82.4% 68.0%
2xzmE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 49.0 4.96e-01 94.1% 84.5%
4uf7B00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.62 37.0 2.49e-01 74.8% 17.0%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.62 47.0 4.40e-01 79.8% 68.8%
2ckfB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 47.0 4.22e-01 82.4% 75.3%
2b1xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 47.0 4.20e-01 82.4% 76.6%
1s3rA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.60 27.0 4.03e-01 81.5% 98.1%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.60 45.0 4.31e-01 77.3% 71.9%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.60 43.0 3.86e-01 75.6% 80.5%
3nv0B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 40.0 3.88e-01 77.3% 59.6%
2f86B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 45.0 4.40e-01 80.7% 72.9%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.59 42.0 3.63e-01 73.9% 62.2%
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.59 51.0 4.25e-01 93.3% 78.3%
3ejvA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 45.0 4.13e-01 81.5% 78.6%
1uliB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 45.0 4.02e-01 82.4% 74.6%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.59 42.0 3.98e-01 74.8% 78.9%
1q42A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 47.0 4.27e-01 85.7% 63.5%
2a15A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 42.0 4.09e-01 89.9% 66.2%
3cnxA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 44.0 4.19e-01 79.0% 73.2%
3b8lA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 45.0 4.30e-01 82.4% 74.5%
3h51A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 43.0 4.07e-01 78.2% 65.5%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 42.0 4.18e-01 82.4% 72.7%
5aigA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 43.0 4.26e-01 83.2% 75.8%
4n4rB00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.57 49.0 4.52e-01 93.3% 87.4%
4gb5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 44.0 4.10e-01 83.2% 76.4%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 39.0 4.05e-01 80.7% 76.8%
5tseA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.56 49.0 4.69e-01 95.8% 91.2%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 40.0 3.96e-01 79.0% 70.7%
4damC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 39.0 4.17e-01 75.6% 85.0%
1vl4A01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.55 35.0 2.96e-01 75.6% 37.1%
7c5wA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 3.88e-01 90.8% 63.5%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.55 43.0 3.88e-01 83.2% 94.6%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.55 40.0 3.77e-01 75.6% 78.6%
1xo8A00 2.60.40.1820 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 37.0 3.46e-01 70.6% 86.8%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.53 43.0 3.96e-01 87.4% 73.5%
2bi0A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 41.0 3.79e-01 81.5% 85.0%
3bghB01 3.30.160.180 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Putative neuraminyllactose-binding hemagglutinin homolog like domain 0.53 46.0 4.09e-01 96.6% 93.0%
1jkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.86e-01 83.2% 71.2%
3ff0A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 3.77e-01 87.4% 69.5%
1bxwA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.50 43.0 3.87e-01 95.8% 80.8%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 36.0 3.79e-01 74.8% 81.1%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3177367 330.1.1.4 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.79 73.0 6.64e-01 98.3% 91.0%
3345144 330.1.1.2 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.78 47.0 5.77e-01 75.6% 94.7%
3586310 330.1.1.2 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.74 42.0 4.55e-01 93.3% 66.0%
3786132 330.1.1.4 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.74 68.0 6.35e-01 100.0% 91.7%
3469530 3274.1.1.1 extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 0.73 45.0 4.26e-01 85.7% 52.1%
4678825 330.1.1.2 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.72 46.0 5.19e-01 98.3% 84.4%
3171541 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.70 52.0 5.09e-01 76.5% 96.1%
4887510 3274.1.1.1 extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 0.68 47.0 5.50e-01 91.6% 100.0%
3959230 243.1.1.77 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.68 48.0 4.52e-01 76.5% 60.7%
4018556 330.1.1.4 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.68 62.0 5.60e-01 100.0% 81.9%
3957483 243.1.1.77 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.67 47.0 4.55e-01 76.5% 63.7%
4838879 3274.1.1.1 extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 0.67 44.0 5.23e-01 94.1% 100.0%
3980016 5084.1.1.10 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.65 47.0 4.47e-01 74.8% 90.7%
2552604 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.65 49.0 4.71e-01 80.7% 69.6%
1558627 243.1.1.15 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › T4BSS_DotI_IcmL 0.64 47.0 4.51e-01 76.5% 70.8%
3212332 243.1.1.85 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26531 0.64 45.0 4.40e-01 79.0% 66.9%
3278413 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.63 47.0 4.44e-01 93.3% 65.7%
4025861 4051.1.1.1 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.63 45.0 4.02e-01 74.8% 73.5%
3387344 7503.1.1.4 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.62 55.0 5.19e-01 95.8% 94.5%
3742742 330.1.1.2 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.62 48.0 4.93e-01 89.1% 85.2%
3385898 7503.1.1.1 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › CsgG 0.62 55.0 5.06e-01 96.6% 98.1%
3838060 7503.1.1.4 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.62 56.0 4.96e-01 96.6% 83.6%
3598427 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.61 48.0 4.52e-01 81.5% 72.1%
4664562 243.1.1.1 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.61 47.0 4.15e-01 82.4% 74.9%
4278326 7503.1.1.0 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.60 53.0 5.07e-01 95.0% 91.1%
3828738 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.60 44.0 4.07e-01 87.4% 58.7%
3696424 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 47.0 4.34e-01 82.4% 71.3%
3242736 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 46.0 4.41e-01 81.5% 75.7%
139114 243.1.1.1 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.60 46.0 4.03e-01 82.4% 71.0%
3960457 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 43.0 4.02e-01 92.4% 59.4%
3588483 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 42.0 4.08e-01 76.5% 65.7%
3811744 243.1.1.49 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 0.59 44.0 4.21e-01 80.7% 67.1%
3181202 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.58 46.0 4.23e-01 83.2% 76.0%
3727921 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 43.0 4.11e-01 78.2% 67.1%
3270312 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.57 41.0 3.66e-01 74.8% 66.3%
3282165 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.57 44.0 4.12e-01 81.5% 75.9%
4942348 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.56 44.0 4.42e-01 100.0% 80.0%
3263321 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 40.0 3.84e-01 75.6% 66.9%
3286818 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 45.0 4.38e-01 84.9% 87.6%
3980178 7503.1.1.13 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › Lipoprotein_16 0.56 47.0 4.20e-01 93.3% 87.6%
3297534 330.1.1.2 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.56 50.0 4.51e-01 99.2% 83.6%
5047377 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.55 41.0 3.90e-01 77.3% 75.7%
1102013 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.55 38.0 3.25e-01 70.6% 60.6%
4937367 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.54 43.0 4.27e-01 100.0% 80.8%
3388283 7503.1.1.0 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.53 45.0 4.19e-01 94.1% 94.8%
5037015 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.53 42.0 4.05e-01 99.2% 74.1%
4032979 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.52 38.0 3.93e-01 73.9% 83.6%
5043294 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.52 42.0 4.13e-01 99.2% 79.2%
5077163 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.52 43.0 4.18e-01 99.2% 79.3%
5072674 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.52 43.0 4.21e-01 99.2% 81.5%
3700334 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.51 37.0 3.28e-01 73.9% 96.0%
3722444 243.1.1.25 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.51 40.0 3.50e-01 83.2% 57.8%
3600840 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 38.0 4.04e-01 80.7% 94.0%
3238606 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 37.0 3.75e-01 74.8% 77.4%
4044404 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.51 36.0 3.78e-01 71.4% 89.5%
3525853 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.51 41.0 3.84e-01 97.5% 69.3%
5014602 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.51 42.0 4.11e-01 99.2% 80.8%
4934997 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.51 36.0 3.62e-01 75.6% 72.5%
5079051 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.51 37.0 3.69e-01 75.6% 77.5%
D2 high residues 175-241
PDB