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KF669650.1__AGY47128.1__CN1A_19__00019
Bact-VirKF669650.1__AGY47128.1__CN1A_19__00019
Identity
- Accession:
- KF669650 ↗
- Kingdom:
- phage
Quality
80.6
mean pLDDT
Taxonomy
TaxID: 1406793
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-65
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2uyyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.81 | 60.0 | 4.68e-01 | 79.7% | 85.4% |
| 4a8eA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.71 | 49.0 | 4.26e-01 | 83.1% | 48.3% |
| 3b0pA02 | 1.20.120.1460 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.70 | 54.0 | 5.02e-01 | 83.1% | 85.3% |
| 1z82B02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.70 | 47.0 | 3.60e-01 | 71.2% | 38.4% |
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.69 | 49.0 | 4.28e-01 | 74.6% | 59.6% |
| 3h20A04 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.69 | 54.0 | 4.67e-01 | 83.1% | 61.8% |
| 4ip8A00 | 1.10.132.110 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein | 0.68 | 52.0 | 4.31e-01 | 83.1% | 48.6% |
| 2vixA02 | 1.10.150.630 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.66 | 49.0 | 4.31e-01 | 88.1% | 53.9% |
| 4gw3A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.64 | 55.0 | 3.51e-01 | 94.9% | 28.9% |
| 4ojmX02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.61 | 50.0 | 4.23e-01 | 94.9% | 75.2% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 40.0 | 4.26e-01 | 72.9% | 80.4% |
| 5o5jT00 | 1.20.58.110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 | 0.59 | 44.0 | 3.95e-01 | 86.4% | 56.5% |
| 2p4vA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.58 | 42.0 | 3.84e-01 | 79.7% | 57.9% |
| 8cdaC01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.58 | 43.0 | 3.48e-01 | 79.7% | 57.3% |
| 3vwbA00 | 1.10.10.2830 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.58 | 41.0 | 3.42e-01 | 79.7% | 39.7% |
| 2ld7B00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.58 | 41.0 | 3.83e-01 | 76.3% | 81.3% |
| 7xpcA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 41.0 | 2.63e-01 | 79.7% | 15.9% |
| 3eccA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 48.0 | 3.50e-01 | 100.0% | 34.6% |
| 4fqnC00 | 1.20.1160.20 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › | 0.56 | 40.0 | 3.64e-01 | 79.7% | 58.8% |
| 2cazC00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.55 | 42.0 | 4.11e-01 | 83.1% | 79.7% |
| 4z4qA04 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.54 | 41.0 | 3.69e-01 | 98.3% | 57.3% |
| 1wh4A01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.54 | 44.0 | 3.77e-01 | 89.8% | 77.7% |
| 5bxhA00 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.53 | 38.0 | 3.29e-01 | 79.7% | 76.2% |
| 2janA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.52 | 41.0 | 3.54e-01 | 89.8% | 81.2% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4336911 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.77 | 66.0 | 6.23e-01 | 94.9% | 78.6% |
| 4551675 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.70 | 46.0 | 3.67e-01 | 79.7% | 36.4% |
| 3611998 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 48.0 | 4.67e-01 | 76.3% | 80.0% |
| 3238743 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 45.0 | 4.53e-01 | 86.4% | 75.0% |
| 3198591 | 109.59.1.7 ↗ | alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain › PPR_2 | 0.61 | 43.0 | 3.67e-01 | 78.0% | 43.8% |
| 3512236 | 219.1.1.48 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C65 | 0.60 | 43.0 | 3.30e-01 | 79.7% | 29.4% |
| 3889216 | 509.1.1.3 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › USH1C_N | 0.60 | 42.0 | 4.01e-01 | 89.8% | 61.3% |
| 5004369 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.59 | 45.0 | 2.89e-01 | 84.7% | 82.5% |
| 3378995 | 108.1.1.111 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › DUF7952 | 0.58 | 41.0 | 4.25e-01 | 93.2% | 81.8% |
| 3277779 | 2006.1.4.36 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_3 | 0.57 | 47.0 | 3.43e-01 | 96.6% | 31.2% |
| 3386136 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.56 | 44.0 | 4.15e-01 | 89.8% | 86.7% |
| 3815976 | 108.1.1.23 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › RST | 0.56 | 39.0 | 3.93e-01 | 74.6% | 86.7% |
| 3290367 | 3470.1.1.0 ↗ | extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain | 0.55 | 39.0 | 3.85e-01 | 76.3% | 73.8% |
| 3418415 | 108.1.1.23 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › RST | 0.54 | 40.0 | 3.98e-01 | 91.5% | 78.3% |
| 3315495 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.54 | 42.0 | 3.74e-01 | 84.7% | 60.0% |
| 3561663 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.53 | 42.0 | 4.26e-01 | 86.4% | 84.7% |
| 4024170 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.53 | 37.0 | 3.73e-01 | 74.6% | 76.7% |