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KF669661.1__AGY48383.1__Slash_94__00094
Bact-VirKF669661.1__AGY48383.1__Slash_94__00094
Identity
- Accession:
- KF669661 ↗
- Kingdom:
- phage
Quality
75.5
mean pLDDT
Taxonomy
TaxID: 1406790
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 85-366
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dpuB03 | 3.30.310.200 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.67 | 27.0 | 4.48e-01 | 82.6% | 100.0% |
| 2x3gA00 | 3.30.70.1910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 28.0 | 4.21e-01 | 88.7% | 94.0% |
| 2jgbA01 | 3.30.760.10 | Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e | 0.65 | 36.0 | 4.45e-01 | 90.1% | 85.5% |
| 2bvfA03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.63 | 46.0 | 5.23e-01 | 86.9% | 98.6% |
| 3rjaA02 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.62 | 47.0 | 5.15e-01 | 83.0% | 95.2% |
| 3ce8A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 21.0 | 3.74e-01 | 86.9% | 96.6% |
| 5l6gA02 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.61 | 46.0 | 5.12e-01 | 83.0% | 96.1% |
| 2cztA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.61 | 23.0 | 3.07e-01 | 84.8% | 60.6% |
| 3lnlB02 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 20.0 | 3.57e-01 | 87.6% | 93.2% |
| 2ipiA02 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.58 | 48.0 | 5.17e-01 | 92.2% | 98.0% |
| 3popA02 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.58 | 49.0 | 5.21e-01 | 92.2% | 98.0% |
| 2wp4B00 | 3.90.1170.40 | Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Molybdopterin biosynthesis MoaE subunit | 0.58 | 29.0 | 4.11e-01 | 84.0% | 100.0% |
| 1gx5A03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.58 | 27.0 | 3.98e-01 | 87.6% | 100.0% |
| 2bopA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 20.0 | 3.56e-01 | 85.8% | 100.0% |
| 3bv8A00 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.56 | 16.0 | 2.91e-01 | 85.8% | 80.0% |
| 2q5wE00 | 3.90.1170.40 | Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Molybdopterin biosynthesis MoaE subunit | 0.55 | 27.0 | 3.77e-01 | 90.4% | 93.4% |
| 4mlaA03 | 3.40.462.10 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain | 0.55 | 42.0 | 4.69e-01 | 81.6% | 99.6% |
| 3ahpA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 21.0 | 3.47e-01 | 89.4% | 93.4% |
| 1j2vA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 21.0 | 3.45e-01 | 89.0% | 96.0% |
| 6c80A03 | 3.40.462.10 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain | 0.54 | 43.0 | 4.67e-01 | 81.2% | 99.6% |
| 1p1lA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 21.0 | 3.45e-01 | 89.4% | 96.1% |
| 2uuvB01 | 3.40.462.40 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidase, cap domain/gating helix | 0.53 | 38.0 | 3.90e-01 | 80.5% | 76.4% |
| 2h5eA03 | 3.30.70.3280 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III | 0.52 | 26.0 | 3.62e-01 | 92.6% | 95.6% |
| 1lxnA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 19.0 | 3.24e-01 | 86.9% | 96.9% |
| 2yq1C00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.51 | 26.0 | 3.59e-01 | 87.6% | 100.0% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5066425 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.67 | 20.0 | 3.98e-01 | 86.2% | 96.2% |
| 4045503 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.65 | 19.0 | 3.89e-01 | 87.2% | 98.7% |
| 4062392 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.65 | 22.0 | 3.74e-01 | 89.4% | 85.0% |
| 4394754 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.65 | 20.0 | 3.70e-01 | 88.7% | 87.8% |
| 4223968 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.65 | 20.0 | 3.86e-01 | 87.9% | 96.2% |
| 4043605 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.65 | 21.0 | 3.87e-01 | 88.3% | 95.3% |
| 4345964 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.64 | 22.0 | 3.85e-01 | 90.1% | 91.6% |
| 4678670 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.63 | 20.0 | 3.78e-01 | 89.0% | 97.5% |
| 4413471 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.63 | 19.0 | 3.75e-01 | 85.8% | 98.7% |
| 4373827 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.63 | 21.0 | 3.77e-01 | 89.4% | 94.3% |
| 4931923 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.63 | 20.0 | 3.83e-01 | 87.2% | 98.8% |
| 3727919 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.63 | 48.0 | 5.03e-01 | 91.5% | 85.4% |
| 4399086 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.63 | 20.0 | 3.72e-01 | 88.7% | 94.1% |
| 4042831 | 304.110.1.4 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › UPF0176_N | 0.62 | 23.0 | 3.99e-01 | 98.6% | 100.0% |
| 3839711 | 2004.1.1.221 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › P-loop_TraG | 0.62 | 60.0 | 4.24e-01 | 100.0% | 91.2% |
| 3587356 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.62 | 21.0 | 3.71e-01 | 89.4% | 93.3% |
| 4105022 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.62 | 21.0 | 3.65e-01 | 89.0% | 92.2% |
| 4682347 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.59 | 49.0 | 5.01e-01 | 91.5% | 88.5% |
| 2319482 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.59 | 46.0 | 4.80e-01 | 91.5% | 86.7% |
| 2390627 | 304.4.1.5 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dyp_perox_N | 0.58 | 29.0 | 4.13e-01 | 82.6% | 97.8% |
| 3283902 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.58 | 48.0 | 4.97e-01 | 91.5% | 89.6% |
| 2721342 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.57 | 47.0 | 4.82e-01 | 91.5% | 88.1% |
| 4954977 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.57 | 39.0 | 4.24e-01 | 82.6% | 81.3% |
| 3238561 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.57 | 18.0 | 3.23e-01 | 96.5% | 86.7% |
| 4219489 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.57 | 46.0 | 4.67e-01 | 91.5% | 85.5% |
| 303762 | 304.4.1.5 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dyp_perox_N | 0.57 | 28.0 | 4.07e-01 | 83.0% | 99.3% |
| 3288914 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.56 | 39.0 | 4.30e-01 | 83.0% | 84.3% |
| 4956201 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.56 | 38.0 | 4.22e-01 | 83.0% | 83.9% |
| 4229813 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.56 | 45.0 | 4.57e-01 | 91.5% | 85.0% |
| 4158782 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.56 | 46.0 | 4.64e-01 | 91.5% | 85.7% |
| 4012046 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.55 | 44.0 | 4.50e-01 | 91.5% | 84.7% |
| 4012947 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.55 | 44.0 | 4.52e-01 | 91.5% | 85.5% |
| 3838882 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.54 | 40.0 | 4.07e-01 | 82.6% | 75.1% |
| 3187370 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.54 | 39.0 | 4.13e-01 | 82.6% | 82.3% |
| 3511125 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.53 | 39.0 | 4.11e-01 | 83.3% | 82.4% |
| 4011207 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.53 | 45.0 | 4.48e-01 | 91.5% | 85.5% |
| 3194712 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.53 | 44.0 | 4.44e-01 | 91.5% | 85.6% |
| 3200848 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.52 | 44.0 | 4.44e-01 | 91.5% | 86.5% |
| 5042464 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.52 | 38.0 | 3.99e-01 | 82.6% | 82.0% |
| 5064881 | 304.1.1.0 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain | 0.51 | 22.0 | 3.18e-01 | 77.0% | 87.2% |
D2
high
residues 396-469
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1twdA00 | 3.20.20.380 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Copper homeostasis (CutC) domain | 0.57 | 46.0 | 3.30e-01 | 90.5% | 33.3% |
| 2bdqA00 | 3.20.20.380 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Copper homeostasis (CutC) domain | 0.51 | 40.0 | 2.96e-01 | 87.8% | 34.4% |
| 1ungE00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.50 | 43.0 | 3.47e-01 | 95.9% | 77.6% |
| 3vueA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.50 | 38.0 | 2.63e-01 | 82.4% | 43.0% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3788930 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 53.0 | 3.51e-01 | 100.0% | 70.8% |
| 4150972 | 2484.1.1.11 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L18p | 0.60 | 43.0 | 4.10e-01 | 77.0% | 76.7% |
| 3276789 | 207.1.1.116 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 | 0.54 | 45.0 | 2.70e-01 | 100.0% | 28.8% |
D3
high
residues 486-550
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2di0A01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.63 | 42.0 | 4.86e-01 | 70.8% | 100.0% |
| 2pcqA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.59 | 45.0 | 3.04e-01 | 86.2% | 81.9% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3453837 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.77 | 54.0 | 6.10e-01 | 86.2% | 96.0% |
| 4953278 | 1076.1.1.1 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like | 0.61 | 52.0 | 3.69e-01 | 100.0% | 53.5% |
| 3575611 | 103.1.1.84 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF28540 | 0.60 | 45.0 | 4.40e-01 | 80.0% | 74.3% |
| 3719797 | 103.1.1.2 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CUE | 0.59 | 44.0 | 4.42e-01 | 78.5% | 90.8% |