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AIE08873.1

Arc-Vir

KF771641__AIE08873.1__X__00005

Identity

Accession:
KF771641 ↗
Protein ID:
AIE08873.1 ↗
Kingdom:
archaea

Quality

78.7 mean pLDDT

Taxonomy

Halovirus_VNH-1

TaxID: 1500510

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-129
PDB
Domain cluster: rep: IMGVR_UViG_2617271222_000001-2617271222-2619159559__D15-116
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.55 27.0 3.31e-01 76.7% 73.0%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 26.0 3.50e-01 93.1% 88.1%
1fneA01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.53 30.0 3.49e-01 76.7% 79.7%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3408588 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.61 26.0 3.22e-01 77.6% 61.4%
4566387 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.60 32.0 3.97e-01 78.4% 85.7%
3260943 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 33.0 3.98e-01 76.7% 100.0%
3525358 220.1.1.50 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.52 34.0 3.43e-01 75.9% 64.2%
3597793 5094.1.1.0 ↗ a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like 0.52 28.0 2.67e-01 70.7% 42.2%
3787905 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.52 25.0 3.06e-01 97.4% 68.6%
4638995 71.1.1.15 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › UCP033729 0.52 39.0 3.31e-01 78.4% 74.2%
3172122 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.50 25.0 3.31e-01 78.4% 91.7%
D2 medium residues 131-183
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26435.2 best DUF8118 60.6 1.20e-16 83.0% 100.0%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rsmA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 50.0 4.00e-01 86.8% 57.4%
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 44.0 4.38e-01 71.7% 80.0%
1y8fA00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.61 47.0 4.82e-01 84.9% 98.0%
1twfI02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 43.0 3.82e-01 73.6% 59.2%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.61 47.0 3.32e-01 88.7% 77.3%
1vclA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 44.0 3.37e-01 86.8% 54.4%
2yuuA00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.59 50.0 4.36e-01 98.1% 74.7%
1fl2A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 41.0 3.13e-01 73.6% 64.5%
3cgbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 41.0 2.88e-01 73.6% 42.9%
3lzwA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 41.0 3.18e-01 73.6% 65.5%
4nwyA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 47.0 3.66e-01 94.3% 85.9%
5b4wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 45.0 2.79e-01 96.2% 73.0%
3iwaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 39.0 2.84e-01 73.6% 38.9%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 44.0 4.15e-01 90.6% 75.8%
2vpjA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.55 39.0 2.49e-01 73.6% 26.6%
2ia7A00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 38.0 3.09e-01 75.5% 50.5%
2d5mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 44.0 3.21e-01 100.0% 78.7%
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 39.0 3.74e-01 79.2% 82.5%
4a8jB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 37.0 2.53e-01 75.5% 86.8%
2kcjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 37.0 3.15e-01 81.1% 42.6%
6epkA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.52 38.0 3.57e-01 83.0% 88.7%
1httA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.52 43.0 3.61e-01 96.2% 98.0%
1ex0B02 3.90.260.10 Alpha Beta › Alpha-Beta Complex › Coagulation Factor XIII; Chain A, domain 2 › Transglutaminase-like 0.52 43.0 2.75e-01 100.0% 70.8%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.52 36.0 2.79e-01 75.5% 39.9%
4q28A00 3.30.160.780 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 38.0 3.11e-01 83.0% 92.7%
1m4zA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.51 36.0 2.59e-01 79.2% 66.8%
3cloC01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 40.0 2.76e-01 88.7% 31.1%
2jmcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 37.0 3.34e-01 81.1% 66.2%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 37.0 3.66e-01 77.4% 78.6%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.51 34.0 3.42e-01 71.7% 83.9%
2ia1A01 3.30.500.20 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains 0.51 37.0 2.94e-01 81.1% 38.7%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4929838 386.1.1.423 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF26435 0.93 70.0 7.65e-01 79.2% 97.7%
3295810 386.1.1.249 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF25908 0.70 59.0 5.16e-01 98.1% 75.3%
3476046 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.65 51.0 5.13e-01 86.8% 92.7%
3212945 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.64 45.0 4.40e-01 75.5% 71.2%
3240040 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.64 51.0 5.05e-01 86.8% 100.0%
3320473 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.63 47.0 2.95e-01 86.8% 26.9%
3659202 1.1.11.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.62 45.0 4.01e-01 79.2% 53.8%
3406043 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.62 49.0 4.41e-01 86.8% 86.7%
3274340 376.1.2.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_4 0.62 49.0 4.38e-01 86.8% 84.0%
4013684 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.62 48.0 4.56e-01 86.8% 81.5%
3206458 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.62 48.0 4.28e-01 86.8% 66.3%
4392916 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.62 46.0 3.28e-01 81.1% 64.0%
4034246 2003.1.2.30 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_3 0.61 43.0 3.18e-01 73.6% 60.0%
3790956 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.61 48.0 4.45e-01 86.8% 79.7%
2124012 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.61 43.0 3.23e-01 73.6% 64.3%
3399001 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 49.0 4.36e-01 92.5% 97.5%
3240342 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.61 48.0 4.78e-01 86.8% 94.5%
3413048 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.60 43.0 2.47e-01 75.5% 30.0%
4306905 2003.1.2.30 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_3 0.60 42.0 3.11e-01 73.6% 60.0%
3779808 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.60 51.0 4.81e-01 98.1% 95.4%
3907024 260.1.1.1 ↗ a+b duplicates or obligate multimers › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › Plectin 0.60 42.0 2.61e-01 75.5% 20.3%
3414426 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.59 41.0 2.74e-01 75.5% 64.0%
4030389 376.1.2.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_4 0.58 47.0 4.00e-01 94.3% 87.4%
3705177 376.1.2.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › PF26235 0.58 43.0 4.12e-01 83.0% 98.5%
3848925 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.58 46.0 4.50e-01 86.8% 83.1%
3483963 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.57 49.0 4.58e-01 94.3% 100.0%
5017692 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 39.0 3.26e-01 71.7% 50.0%
3442564 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.56 43.0 4.26e-01 86.8% 96.4%
3403430 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.56 44.0 4.35e-01 86.8% 94.5%
3628466 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.55 43.0 4.32e-01 86.8% 89.1%
3389626 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.55 45.0 4.13e-01 96.2% 89.3%
3466584 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 38.0 3.62e-01 75.5% 93.8%
3550389 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.53 41.0 4.12e-01 86.8% 85.5%
5044272 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.53 35.0 3.64e-01 73.6% 74.0%
4012002 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 36.0 3.37e-01 71.7% 74.3%
3449349 6043.1.1.4 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 0.52 43.0 3.59e-01 100.0% 56.2%
3402054 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.52 42.0 4.11e-01 92.5% 83.3%
3573580 2484.3.1.3 ↗ mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › FACT-Spt16_Nlob 0.51 35.0 2.83e-01 73.6% 50.4%
2832995 274.1.1.13 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH 0.51 35.0 2.83e-01 75.5% 32.0%
3815420 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.51 35.0 3.49e-01 73.6% 92.7%
3410370 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 35.0 3.30e-01 77.4% 84.3%